Structure of PDB 6im4 Chain B Binding Site BS01

Receptor Information

>6im4 Chain B (length=390) Species: 66797 (Spbetavirus SPbeta) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MELIRIAMKKDLENDNSLMNKWATVAGLKNPNPLYDFLNHDGKTFNEFSS
IVNIVKSQYPDREYELMKDYCLNLDVKTKAARSALEYADANMFFEIEDVL
IDSMISCSNMKSKEYGKVYKIHRELSNSVITEFEAVKRLGKLNIKTPEMN
SFSRLLLLYHYLSTGNFSPMAQLIKQIDLSEISENMYIRNTYQTRVHVLM
SNIKLNENSLEECREYSKKALESTNILRFQVFSYLTIGNSLLFSNYELAQ
ENFLKGLSISVQNENYNMIFQQALCFLNNVWRKENKWINFESDSIMDLQE
QAHCFINFNENSKAKEVLDKLDLLVHNDNELAMHYYLKGRLEQNKACFYS
SIEYFKKSNDKFLIRLPLLELQKMGENQKLLELLLLLEYA

Ligand information

>6im4 Chain C (length=6) Species: 32630 (synthetic construct) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

GMPRGA

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6im4 Structural basis of AimP signaling molecule recognition by AimR in Spbeta group of bacteriophages.
Resolution	1.93 Å
Binding residue (original residue number in PDB)	F167 V198 N202 N206 R228 F232 N239 A273 F276 M296 Q299 E300 D360
Binding residue (residue number reindexed from 1)	F167 V198 N202 N206 R228 F232 N239 A273 F276 M296 Q299 E300 D360

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Biological Process
GO:0098689	latency-replication decision

View graph for
Biological Process

External links

PDB	RCSB:6im4, PDBe:6im4, PDBj:6im4
PDBsum	6im4
PubMed	30421358
UniProt	O64094\|AIMR_BPSPB AimR transcriptional regulator (Gene Name=aimR)

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