Structure of PDB 6hmj Chain B Binding Site BS01

Receptor Information
>6hmj Chain B (length=352) Species: 479431 (Nakamurella multipartita DSM 44233) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ASFGSFVLDAGSARFVGSDELALVLGFAPGDVVLTPAVVLAHLHPDDRLE
WQAGLQRCLATGRPVVVNHLLLTAEAEPRPAMTTLTALTEQDRVRAVTGV
ITDLSDRVRRATEAEIRQAVRAAAATRSEIDQAKGIVMAAFDVDADQAFA
LLKWHSSQSNRKLRDLATGMIEGLAAANSALPLRRRLSTVFTDMGCPAPS
TKGWTVPPPTSGLIPTALLPGILTRAAHDASVAITVADVTAPDQPLVYAN
PAFERLTGYAAAEVLGRNCRFLQAESGDPHERSAIRSAIANGDAVTTLIR
NFRQDGHAFWNEFHLSPVRNGAGRVTHYIGYQLDVTERVERDQQLEQLAS
LE
Ligand information
Ligand IDFMN
InChIInChI=1S/C17H21N4O9P/c1-7-3-9-10(4-8(7)2)21(15-13(18-9)16(25)20-17(26)19-15)5-11(22)14(24)12(23)6-30-31(27,28)29/h3-4,11-12,14,22-24H,5-6H2,1-2H3,(H,20,25,26)(H2,27,28,29)/t11-,12+,14-/m0/s1
InChIKeyFVTCRASFADXXNN-SCRDCRAPSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)CC(C(C(COP(=O)(O)O)O)O)O
OpenEye OEToolkits 1.7.6Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O
ACDLabs 12.01N=2C(=O)NC(=O)C3=Nc1cc(C)c(C)cc1N(C=23)CC(O)C(O)C(O)COP(=O)(O)O
CACTVS 3.385Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)c2cc1C
CACTVS 3.385Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)c2cc1C
FormulaC17 H21 N4 O9 P
NameFLAVIN MONONUCLEOTIDE;
RIBOFLAVIN MONOPHOSPHATE
ChEMBLCHEMBL1201794
DrugBankDB03247
ZINCZINC000003831425
PDB chain6hmj Chain B Residue 400 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6hmj A blue light receptor that mediates RNA binding and translational regulation.
Resolution2.51 Å
Binding residue
(original residue number in PDB)		A252 N283 C284 R285 L287 Q288 R297 I300 R301 N316 N326 F328 L330 G345 Q347
Binding residue
(residue number reindexed from 1)		A237 N268 C269 R270 L272 Q273 R282 I285 R286 N301 N311 F313 L315 G330 Q332
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003723 RNA binding

View graph for
Molecular Function
External links
PDB RCSB:6hmj, PDBe:6hmj, PDBj:6hmj
PDBsum6hmj
PubMed31451761
UniProtC8XJT7

[Back to BioLiP]