Structure of PDB 6fqq Chain B Binding Site BS01
Receptor Information
>6fqq Chain B (length=61) Species:
9606
(Homo sapiens) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
GNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINA
RRRLLPDMLRK
Ligand information
>6fqq Chain L (length=16) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
attgacagctgtcaat
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
6fqq
TGIF1 homeodomain interacts with Smad MH1 domain and represses TGF-beta signaling.
Resolution
3.25 Å
Binding residue
(original residue number in PDB)
Y191 K197 R219 R220
Binding residue
(residue number reindexed from 1)
Y23 K29 R51 R52
Binding affinity
PDBbind-CN
: Kd=388.6nM
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003677
DNA binding
Biological Process
GO:0006355
regulation of DNA-templated transcription
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:6fqq
,
PDBe:6fqq
,
PDBj:6fqq
PDBsum
6fqq
PubMed
30060237
UniProt
Q15583
|TGIF1_HUMAN Homeobox protein TGIF1 (Gene Name=TGIF1)
[
Back to BioLiP
]