Structure of PDB 6dzd Chain B Binding Site BS01

Receptor Information

>6dzd Chain B (length=267) Species: 1402 (Bacillus licheniformis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

YNPFRLDAPSMLLIEEWNQVTAGFTTKNGGESEPPFHSLNTGLHVQDHEQ
HVINNRKKVADILKTDLHDWVFADQTHEDRIHKVTDGDRASGAFRYDTAL
KATDGLYTDRPNLFLALCFADCVPVYFYDPVRSLVGIAHAGWKGTALGIA
ASMVDMWIRREGSNPADIRAVIGPAIGSCCYTVDDHVIDKIRNLPLQQED
KAFLTIKEGEYRLELKEVNRQLLVHAGIPNGQIEVSSLCTSCERSLFFSH
RRDRGKTGRMMSFIGLK

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

6dzd Chain B Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6dzd Crystal structure of Bacillus licheniformis hypothetical protein YfiH
Resolution	2.66 Å
Binding residue (original residue number in PDB)	C189 C190 C249 C252
Binding residue (residue number reindexed from 1)	C179 C180 C239 C242
Annotation score	1

Enzymatic activity

Enzyme Commision number

2.4.2.1: purine-nucleoside phosphorylase.
2.4.2.28: S-methyl-5'-thioadenosine phosphorylase.
3.5.4.4: adenosine deaminase.

Gene Ontology

	Molecular Function
GO:0004000	adenosine deaminase activity
GO:0005507	copper ion binding
GO:0016740	transferase activity
GO:0016787	hydrolase activity
GO:0017061	S-methyl-5-thioadenosine phosphorylase activity
GO:0046872	metal ion binding
GO:0046936	2'-deoxyadenosine deaminase activity

View graph for
Molecular Function

External links

PDB	RCSB:6dzd, PDBe:6dzd, PDBj:6dzd
PDBsum	6dzd
PubMed
UniProt	A5A677

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