Structure of PDB 6byt Chain B Binding Site BS01

Receptor Information
>6byt Chain B (length=482) Species: 1537994 (Alteromonas sp. LOR) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TSGVLLESQTKITDGALHFDGKKLNHNTFENPSKSQAYDYFFGRNISAHG
DAVKPYKHFVFMTWYKGGKEERNVMLSRFNTKTGVVKTIQFPHRHTGFRG
DPLVGESHNTIGLAVSPLNGTIHMVYDMHAYVDDDETGRFKGRFVDDFFR
YSFSVAGAADVPDDEFTLEQFVKDTSELSQGADDYKHLTMTGNLQDKENF
SALTYPKFYTSDDGELLHYMRWGGNNNGAYYFNKYDAKNQKWTRFTPFNH
KDQKTHGNAYNWGLYGQMKYINGKLRVGFQQNSANNDDRFKYQNGVYYAY
SDHPDGLGNWKNVDGEDMTWPLVNSDEIKIFEPGDYIDHTAPNSVHIVTG
FDWTVTENDDVHFITHVRSTDTKRSDYKEVSIHAFKPANAVDFTITTDFT
GADSIYTSGDSIFIIGLKNGYPFVEKAKGGSNDFEVVYQQASGVKFDHGT
IHIENGKAYYYLMEKGAGNALPLHLQVIDLGV
Ligand information
Ligand IDBDP
InChIInChI=1S/C6H10O7/c7-1-2(8)4(5(10)11)13-6(12)3(1)9/h1-4,6-9,12H,(H,10,11)/t1-,2-,3+,4-,6+/m0/s1
InChIKeyAEMOLEFTQBMNLQ-QIUUJYRFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0[C@@H]1([C@@H]([C@H](O[C@H]([C@@H]1O)O)C(=O)O)O)O
OpenEye OEToolkits 1.7.0C1(C(C(OC(C1O)O)C(=O)O)O)O
CACTVS 3.370O[CH]1O[CH]([CH](O)[CH](O)[CH]1O)C(O)=O
ACDLabs 12.01O=C(O)C1OC(O)C(O)C(O)C1O
CACTVS 3.370O[C@@H]1O[C@@H]([C@@H](O)[C@H](O)[C@H]1O)C(O)=O
FormulaC6 H10 O7
Namebeta-D-glucopyranuronic acid;
beta-D-glucuronic acid;
D-glucuronic acid;
glucuronic acid
ChEMBLCHEMBL1159524
DrugBankDB03156
ZINCZINC000004097543
PDB chain6byt Chain D Residue 2 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6byt Structure-function analyses of a PL24 family ulvan lyase reveal key features and suggest its catalytic mechanism.
Resolution2.2 Å
Binding residue
(original residue number in PDB)		H146 Y243
Binding residue
(residue number reindexed from 1)		H108 Y205
Annotation score4
Enzymatic activity
Enzyme Commision number 4.2.2.-
Gene Ontology
Molecular Function
GO:0016829 lyase activity
GO:0046872 metal ion binding
Cellular Component
GO:0005576 extracellular region
GO:0005886 plasma membrane

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:6byt, PDBe:6byt, PDBj:6byt
PDBsum6byt
PubMed29382716
UniProtA0A109PTH9|UL24S_ALTSL Ulvan lyase, short isoform (Gene Name=LOR_107)

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