Structure of PDB 6bs4 Chain B Binding Site BS01

Receptor Information
>6bs4 Chain B (length=355) Species: 83332 (Mycobacterium tuberculosis H37Rv) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PKTLDMGAILADTSNRVVVCCGAGGVGKTTTAAALALRAAEYGRTVVVLT
IDPAKRLAQALGINDLGNTPQRVPLAPEVPGELHAMMLDMRRTFDEMVMQ
YSGPERAQSILDNQFYQTVATSLAGTQEYMAMEKLGQLLSQDRWDLIVVD
TPPSRNALDFLDAPKRLGSFMDSRLWRLLLAITGVMGLAMKALSTVLGSQ
MLADAAAFVQSLDAGGFREKADRTYALLKRRGTQFVVVSAAEPDALREAS
FFVDRLSQESMPLAGLVFNRTHPMLCALPIERAIDAAETLDAETSLAAAV
LRIHAERGQTAKREIRLLSRFTGANPTVPVVGVPSLPFDVSDLEALRALA
DQLTT
Ligand information
Ligand IDADP
InChIInChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyXTWYTFMLZFPYCI-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N
FormulaC10 H15 N5 O10 P2
NameADENOSINE-5'-DIPHOSPHATE
ChEMBLCHEMBL14830
DrugBankDB16833
ZINCZINC000012360703
PDB chain6bs4 Chain B Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6bs4 Characterization of Guided Entry of Tail-Anchored Proteins 3 Homologues in Mycobacterium tuberculosis.
Resolution2.5 Å
Binding residue
(original residue number in PDB)		G29 G31 K32 T33 T34 N283 R284 S355 L356 D359 V360
Binding residue
(residue number reindexed from 1)		G25 G27 K28 T29 T30 N269 R270 S335 L336 D339 V340
Annotation score5
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 00:28:11 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6bs4', asym_id = 'B', bs = 'BS01', title = 'Characterization of Guided Entry of Tail-Anchore...teins 3 Homologues in Mycobacterium tuberculosis.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6bs4', asym_id='B', bs='BS01', title='Characterization of Guided Entry of Tail-Anchore...teins 3 Homologues in Mycobacterium tuberculosis.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0005524,0016887', uniprot = '', pdbid = '6bs4', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0005524,0016887', uniprot='', pdbid='6bs4', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>