Structure of PDB 6b23 Chain B Binding Site BS01

Receptor Information
>6b23 Chain B (length=284) Species: 53369 (Dubowvirus dv80alpha) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PDNVMMHEKKDGTLMNEFTTPILQEVMENSKIMQLGKYEPMEGTEKKFTF
WADKPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTYSQ
FFEEMKPMIAEAFYKKFDEAGILNQGNNPFGKSIAQSIEKTNKVIKGDFT
QDNIIDLEALLEDDELEANAFISKTQNRSLLRKIVDPETKERIYDRNSDS
LDGLPVVNLKSSNLKRGELITGDFDKLIYGIPQLIEYKIDETAQLSTVKN
EDGTPVNLFEQDMVALRATMHVALHIADDKAFAK
Ligand information
>6b23 Chain b (length=15) Species: 1280 (Staphylococcus aureus) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
GTTLQNLAKQNRIIK
Receptor-Ligand Complex Structure
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PDB6b23 Competing scaffolding proteins determine capsid size during mobilization ofStaphylococcus aureuspathogenicity islands.
Resolution3.7 Å
Binding residue
(original residue number in PDB)		Q49 M52 E53 Q59 G61 Y63 N194 A195
Binding residue
(residue number reindexed from 1)		Q24 M27 E28 Q34 G36 Y38 N169 A170
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:6b23, PDBe:6b23, PDBj:6b23
PDBsum6b23
PubMed28984245
UniProtA4ZFB3|CAPSD_BP80A Major capsid protein (Gene Name=gp47)

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