Structure of PDB 6ab6 Chain B Binding Site BS01

Receptor Information
>6ab6 Chain B (length=303) Species: 430911 (Penaeus vannamei nodavirus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ISRLGPDSDFLTSVVAKASTSIVTPADRILVKQPLSASSFPGTRITGLSS
YWERYKWLSAVARYVPAVPNTVACQFVMYIDTDPLDDPSNISDDNQIVRQ
AVSQAGSNQFNFNTSKTVPLIVRADNQYYYTGVDKQNLRFSLQGILYIIQ
VTDLINFNGELITQDLTCGSLFLDWLVNFSIPQINPTSLTDVRVDKAVNF
IKPEVSGVAEIQTVTGLSPSTSYLLTPAFLEQNFQSEAGIYILSATPVEG
EGTISINMDPTVTTVSGFIKVKTDTFGTFDLSVVLTTASKKQTTGFNIIA
ATS
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain6ab6 Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6ab6 The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Resolution3.5 Å
Binding residue
(original residue number in PDB)		E118 N250
Binding residue
(residue number reindexed from 1)		E53 N185
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
GO:0046872 metal ion binding
Cellular Component
GO:0019028 viral capsid
GO:0044423 virion component

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Molecular Function
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Cellular Component
External links
PDB RCSB:6ab6, PDBe:6ab6, PDBj:6ab6
PDBsum6ab6
PubMed30820467
UniProtA5H7Q8

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