Structure of PDB 5z87 Chain B Binding Site BS01

Receptor Information
>5z87 Chain B (length=755) Species: 874156 (Aurantiacibacter marinus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QASDDYRDRSLSPARRAAALANLMTLDEMAAQLNCPRAADVMSDPAGFEA
DFPYFAHGIGGVYSASLEAGPEDNARAVMAMQQEVVSRSRFGIPAFVFEE
CLHGLLADGATQFPQAMAMACAFRPDMVRQVFEATAKEARSRGSQGCFSP
NIDICTDPRWGRSEETWGEDPHVVTVSAKAIVEGLQGAPAEYLPANRIAT
SVKHFAGYGQGIGGRNFAPSHIGPVEMQNVVLPPFRAAITEAGSIGLMAS
HGEIDGVPAHADTHLLNDVLRDDWGFEGYVVSDWDDVRRIHSLHGVAGSE
AEAAIMGLRAGVDIELANNGVYLMLPQLVRDGLLEERYVRRAAERILAAK
FKCGLFDMPFADPALAGRLARSTEHKLLARRMAEESIVLLQNEGNVLPLQ
SSAVRKMLVVGPNAASVHLGGYSPKPFVGVSALEGLQAYAEQAGFEVEYA
QGCAITAGDEGNNEIETDASDESVQADPARNRRLIAEAVATAQDCDVIVM
CLGGNESTAREAYFAGDSRGDRDDLELIGEQNELAEALLALGKTTVAVLI
HGRPLSPLVLAENCPAILDAFYPGEQGGHAIASILFGDVNPSGKLPVTIV
RNVGQLPGYYYQKPTGRFRNYVFSDSTPLYPFGHGLSYTSFGYGAPQAER
ASIGLQDRLRVSVSVRNTGDRAGQDVVQLYIRDSIASRARPIKEMRGFQK
VLLEPGEVQVVQFELGPEDFGYRDADGKLLVEPGEIVIMAGPDSQNLQET
RITLV
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5z87 Chain B Residue 803 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5z87 Structural and biochemical analysis of a novel b-glucosidase EmGH1 from Erythrobacter marinus
Resolution2.3 Å
Binding residue
(original residue number in PDB)		T538 R552
Binding residue
(residue number reindexed from 1)		T508 R522
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0009044 xylan 1,4-beta-xylosidase activity
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0045493 xylan catabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5z87, PDBe:5z87, PDBj:5z87
PDBsum5z87
PubMed
UniProtA0A0H0XV02

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