Structure of PDB 5z06 Chain B Binding Site BS01

Receptor Information
>5z06 Chain B (length=698) Species: 435591 (Parabacteroides distasonis ATCC 8503) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KPYDYVFFENSLMKGDYFYSQAKYTSPSWIKNARHHLPVAGSVAFTPGNS
LELTYVSAPGGDWYSEIQYCPVRGNDFFREPSTLSMQVRLRESMNAAALP
NIAIRYADSTYTQYLNLRNYLKDTRPGVWHPVSIPLEDFGLNAVNDTNIK
KLAAVALRPGTADGNEYTIYLDDIELLPASLPSVSALNAPVLQEAKAYER
HIDIKWIPKEDIKYYRIYRSFDGITYQPVAVRRPWMNRYTDFLGEVGKKA
YYKVTAVDYALNESNDSQTVSATTYPMTDEQLLDMVQEANFRYYWEGAEP
NSGLARENIPGRNDMIATGASGFGIMAIVAGIERGFITREEGVQRFLKIT
SFLEKADKFHGAVSHFIDGTTGKTVAFFGPKDNGGDLVETSFLFQGLLTA
RQYFNQENDKEKQIRKSIDNLWKNVEWSWYKQFKDSPYLYWHWSPDQAWV
INHKLIGWNETMITYMLAIMGPKYGISPEMYYSGWASQEEYAQEYRADWG
RVEDGKMYTNGNTYYGENLKVGVSNGGPLFFIHYSYLGLDPHKFTDKYTN
YFENNQKMAKINQRYCIENQGGYVGYGEDCWGLTASDFAWNYQAQEPMPH
RDNGTMAPTGALASFPYTPDASMKALRNYYRNHGSFLWGEYGFRDAFNLT
VNWVSPLFMGLNQAPVTVMIENYRTNLLWNLFMSHPDVQKGIQKIQSI
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5z06 Chain B Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5z06 Characterization and Structural Analysis of a Novel exo-Type Enzyme Acting on beta-1,2-Glucooligosaccharides from Parabacteroides distasonis
Resolution2.1 Å
Binding residue
(original residue number in PDB)		E29 N30 T66 N69 D192
Binding residue
(residue number reindexed from 1)		E9 N10 T46 N49 D172
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.214: exo beta-1,2-glucooligosaccharide sophorohydrolase (non-reducing end).
Gene Ontology
Molecular Function
GO:0016798 hydrolase activity, acting on glycosyl bonds
Cellular Component
GO:0042597 periplasmic space

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Molecular Function
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Cellular Component
External links
PDB RCSB:5z06, PDBe:5z06, PDBj:5z06
PDBsum5z06
PubMed29763309
UniProtA6LGF6|SOPH_PARD8 Exo beta-1,2-glucooligosaccharide sophorohydrolase (non-reducing end) (Gene Name=BDI_3064)

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