Structure of PDB 5yfd Chain B Binding Site BS01

Receptor Information
>5yfd Chain B (length=689) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HRERFLADKSAPLCGMDIRKSFDQLSSKEKLYTHYVTEASWAGARIIQAQ
WTPQATDLYDLLILTFSVNGKLADLNALKTSSGLSEDDWEALIQYTVQVL
SNLVNYKTFGFTKIIPRVDAEKFESVVKASSNADQGSALFTKLKQHIYAL
SPESALFIGKRKDGHVSNYYLGEPVGDAEVDAIQNVAEKLGVDILNTRVK
KNGAGDYTLLVASAKTSPPSVHDFQIDSTPAKLTIEYGDYASSLTKVVAA
LQEAKQYTANDHQSAMIEGYVKSFNSGSIPEHKAASTEWVKDIGPVVESY
IGFVETYVDPYGGRAEWEGFTAIVDKQLSAKYEALVNGAPKLIKSLPWGT
DFEVDVFRKPDFTALEVVSFATGGIPAGINIPNYYEVRESTGFKNVSLAN
ILAAKVPNEELTFIHPDDVELYNAWDSRAFELQVANHELLGHGSGKLFQE
GADGKLNFDPEKVINPLTGKPITSWYKPGQTPDSVLGEVSSSMEECRAET
VALYLVSNLDILKIFNYVDKQDIEDIQYITFLLMARAGLRALEFYDPATK
KHGQAHMQARMGITQYLIQAGIARLELIQDANGELENLYVRVDREKVLSK
GKEVVGQLLIELQVRKSTADGTGSRDFYTTLTEPISGWEGKIRDIVLKKK
LPRKIFVQPNTFVVNGEVQLKEYPLTAAGVIESFIERRL
Ligand information
Ligand IDCU
InChIInChI=1S/Cu/q+2
InChIKeyJPVYNHNXODAKFH-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Cu+2]
CACTVS 3.341[Cu++]
FormulaCu
NameCOPPER (II) ION
ChEMBL
DrugBankDB14552
ZINC
PDB chain5yfd Chain B Residue 806 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5yfd Crystal structures of Aflatoxin-oxidase from Armillariella tabescens reveal a dual activity enzyme.
Resolution1.76 Å
Binding residue
(original residue number in PDB)		H443 H448 E501
Binding residue
(residue number reindexed from 1)		H437 H442 E495
Annotation score3
Enzymatic activity
Enzyme Commision number 3.4.14.4: dipeptidyl-peptidase III.
Gene Ontology
Molecular Function
GO:0004177 aminopeptidase activity
GO:0008235 metalloexopeptidase activity
GO:0008237 metallopeptidase activity
GO:0008239 dipeptidyl-peptidase activity
GO:0046872 metal ion binding
Biological Process
GO:0006508 proteolysis
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5yfd, PDBe:5yfd, PDBj:5yfd
PDBsum5yfd
PubMed29050944
UniProtB0S4Q0

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