Structure of PDB 5xt3 Chain B Binding Site BS01

Receptor Information
>5xt3 Chain B (length=333) Species: 1280 (Staphylococcus aureus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VRARVISHALKDILAEGDKVIIMGHKRPDLDAIGAAIGVSRFAMMNNLEA
YIVLNETDIDPTLRRVMNEIDKKPELRERFITSDDAWDMMTSKTTVVIVD
THKPELVLDENVLNKANRKVVIDHHRRGESFISNPLLIYMEPYASSTAEL
VTELLEYQPTEQRLTRLESTVMYAGIIVDTRNFTLRTGSRTFDAASYLRA
HGADTILTQHFLKDDVDTYINRSELIRTVKVEDNGIAIAHGSDDKIYHPV
TVAQAADELLSLEGIEASYVVARREDNLIGISARSLGSVNVQLTMEALGG
GGHLTNAATQLKGVTVEEAIAQLQQAITEQLSR
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain5xt3 Chain B Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5xt3 Structural and biochemical characterization of the catalytic domains of GdpP reveals a unified hydrolysis mechanism for the DHH/DHHA1 phosphodiesterase
Resolution2.591 Å
Binding residue
(original residue number in PDB)		D386 D455 H479 D534
Binding residue
(residue number reindexed from 1)		D31 D100 H124 D179
Annotation score1
Enzymatic activity
Enzyme Commision number 3.1.4.-
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding

View graph for
Molecular Function
External links
PDB RCSB:5xt3, PDBe:5xt3, PDBj:5xt3
PDBsum5xt3
PubMed29203646
UniProtA0A0U1MUE2

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