Structure of PDB 5xqo Chain B Binding Site BS01

Receptor Information
>5xqo Chain B (length=881) Species: 5076 (Penicillium chrysogenum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NCTSSSATVHWLGDKPTYHAGVTFGLPWPQGKYRPQETSFSLTLQSWATG
YWADGSLKWTAHAIAESNQIYDQYTVTASSLGCSIVVTDNSDALTVNTGE
VAVSFPKGGNVIIGDIKTKSGKVIGANGRLVLQSQDSVPDNFDNRANSPI
QYSNFDGNINEVFVNQTSARTLVTVRGNHTVTDGTDHDPWLPFVVRFYLY
ANSATIKVMHSIVFDGDENDFITGLGIRFDVPLKGEEYYDRHIRFAGVDG
GIFNEAVQGITGLRRDPGEEIRAAQFAGQKLADTETWEPRVSTRLKWIPT
WADYGLTQLTADGFGLKKRTKAGQSWVNIPSGTRAEGLAYLGGATQGGLA
VGLRDFWKRYPVGLDISNAASDTGELTLWLYSPAAEPLDLRPFHDGLGQD
GYEDQLDALEITFEDWEPGFDTPYGIARTSEVYLFAFDQTPTSDKLASLT
AYMNDPPVLVAEPKYIHETQALGEYWALPGSASPAAATLEDRLQFIFDFY
KGQIEQRRWYGFLDYGDFMHTYDPDRHTWRYDVGGYAWDNSELSPDLFFW
LYFLRTGSKDAYRFAEALTRHTGEVDVYHIGDWKGLGTRHGVQHWSDSAK
QARISQPQYRKYFFYLSGGDERVGELLEELLDTDKTYGELDPQRKVRTDG
WEPSPNSTVSFGLGTDWSGLAAGWLIEWERRGPRWEEAKTKLTNTIAGIA
NLTNGFVTGSGLYDPVTWTLGPPPSDPGNRGNVSISHLNAVFGLPEVVSE
AIAYLADDIPKGFKQAWLDYCYYYHASASEQKDRYGVSFSISLLQAHSRL
AAYAAYETKNKTLALRAWKDFYASDGLLPDAPWNITHVDGSDVLVPVDEA
AWLATNDIAQYGLAVIQNLAYVSDSLDDYQS
Ligand information
Ligand IDGAD
InChIInChI=1S/C6H8O5/c7-3-1-5(6(9)10)11-2-4(3)8/h1,3-4,7-8H,2H2,(H,9,10)/t3-,4-/m0/s1
InChIKeyGQECVRZDTXJRPX-IMJSIDKUSA-N
SMILES
SoftwareSMILES
CACTVS 3.341O[CH]1COC(=C[CH]1O)C(O)=O
OpenEye OEToolkits 1.5.0C1[C@@H]([C@H](C=C(O1)C(=O)O)O)O
CACTVS 3.341O[C@H]1COC(=C[C@@H]1O)C(O)=O
ACDLabs 10.04O=C(O)C=1OCC(O)C(O)C=1
OpenEye OEToolkits 1.5.0C1C(C(C=C(O1)C(=O)O)O)O
FormulaC6 H8 O5
Name2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid
ChEMBL
DrugBankDB03284
ZINC
PDB chain5xqo Chain C Residue 4 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5xqo Crystal structure of exo-rhamnogalacturonan lyase from Penicillium chrysogenum as a member of polysaccharide lyase family 26
Resolution3.2 Å
Binding residue
(original residue number in PDB)		R309 R310
Binding residue
(residue number reindexed from 1)		R264 R265
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5xqo, PDBe:5xqo, PDBj:5xqo
PDBsum5xqo
PubMed29574769
UniProtB6H7Q7

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