Structure of PDB 5vgt Chain B Binding Site BS01

Receptor Information
>5vgt Chain B (length=113) Species: 10761 (Lederbergvirus Sf6) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VLTKGEIVLFALRKFAIASNASLTDVEPQSIEDGVNDLEDMMSEWMINPG
DIGYAFATGDEQPLPDDESGLPRKYKHAVGYQLLLRMLSDYSLEPTPQVL
SNAQRSYDALMTD
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5vgt Chain B Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5vgt High-resolution structure of podovirus tail adaptor suggests repositioning of an octad motif that mediates the sequential tail assembly.
Resolution1.776 Å
Binding residue
(original residue number in PDB)		D43 E47
Binding residue
(residue number reindexed from 1)		D40 E44
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links