Structure of PDB 5vg3 Chain B Binding Site BS01

Receptor Information
>5vg3 Chain B (length=376) Species: 1423 (Bacillus subtilis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DIPQPIRGDKGATVKIPRNIERDRQNPDMLVPPETDHGTVSNMKFSFSDT
HNRLEKGGYAREVTVRELPISENLASVNMRLKPGAIRELHWHKEAEWAYM
IYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVF
DDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQ
LPGSLKDDIVEGPNGEVPYPFTYRLLEQEPIESEGGKVYIADSTNFKVSK
TIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNY
QAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQWLAMLPET
FVQAHLDLGKDFTDVLSKEKHPVVKK
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain5vg3 Chain B Residue 407 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5vg3 Structure of Oxalate Decarboxylase from Bacillus subtilis at pH 4.6
Resolution1.451 Å
Binding residue
(original residue number in PDB)		H273 H275 E280 H319
Binding residue
(residue number reindexed from 1)		H268 H270 E275 H314
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) R92 H95 H97 E101 H140 E162
Catalytic site (residue number reindexed from 1) R87 H90 H92 E96 H135 E157
Enzyme Commision number 4.1.1.2: oxalate decarboxylase.
Gene Ontology
Molecular Function
GO:0016831 carboxy-lyase activity
GO:0046564 oxalate decarboxylase activity
GO:0046872 metal ion binding
Biological Process
GO:0033609 oxalate metabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5vg3, PDBe:5vg3, PDBj:5vg3
PDBsum5vg3
PubMed
UniProtO34714|OXDC_BACSU Oxalate decarboxylase OxdC (Gene Name=oxdC)

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