Structure of PDB 5vaj Chain B Binding Site BS01

Receptor Information
>5vaj Chain B (length=136) Species: 272558 (Halalkalibacterium halodurans C-125) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMG
EFLAIVHGLRYLKERNSRKPIYSNSQTAIKWVKDKKAKSTLVRNEETALI
WKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYG
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5vaj Amide linkages mimic phosphates in RNA interactions with proteins and are well tolerated in the guide strand of short interfering RNAs.
Resolution1.95 Å
Binding residue
(original residue number in PDB)		D71 V72 G73 S74 Q75 G76 N105 E109 N132 Q134 K180 T183
Binding residue
(residue number reindexed from 1)		D13 V14 G15 S16 Q17 G18 N47 E51 N74 Q76 K122 T125
Enzymatic activity
Enzyme Commision number 3.1.26.4: ribonuclease H.
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0004523 RNA-DNA hybrid ribonuclease activity

View graph for
Molecular Function
External links
PDB RCSB:5vaj, PDBe:5vaj, PDBj:5vaj
PDBsum5vaj
PubMed28854734
UniProtQ9KEI9|RNH1_HALH5 Ribonuclease H (Gene Name=rnhA)

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