Structure of PDB 5v84 Chain B Binding Site BS01

Receptor Information
>5v84 Chain B (length=101) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKK
LNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHRAMMK
H
Ligand information
Ligand ID96V
InChIInChI=1S/C26H32N4O2/c1-5-13-30-17-23(22-16-18(2)27-24(22)26(30)32)25(31)28(4)21-11-14-29(15-12-21)19(3)20-9-7-6-8-10-20/h5-10,16-17,19,21,27H,1,11-15H2,2-4H3/t19-/m0/s1
InChIKeyWFCPQMAYBTUYAR-IBGZPJMESA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6Cc1cc2c([nH]1)C(=O)N(C=C2C(=O)N(C)C3CCN(CC3)C(C)c4ccccc4)CC=C
ACDLabs 12.01c12C(=CN(C(c1nc(c2)C)=O)C\C=C)C(=O)N(C)C3CCN(CC3)C(c4ccccc4)C
CACTVS 3.385C[CH](N1CCC(CC1)N(C)C(=O)C2=CN(CC=C)C(=O)c3[nH]c(C)cc23)c4ccccc4
OpenEye OEToolkits 2.0.6Cc1cc2c([nH]1)C(=O)N(C=C2C(=O)N(C)C3CCN(CC3)[C@@H](C)c4ccccc4)CC=C
CACTVS 3.385C[C@H](N1CCC(CC1)N(C)C(=O)C2=CN(CC=C)C(=O)c3[nH]c(C)cc23)c4ccccc4
FormulaC26 H32 N4 O2
NameN,2-dimethyl-7-oxo-N-{1-[(1S)-1-phenylethyl]piperidin-4-yl}-6-(prop-2-en-1-yl)-6,7-dihydro-1H-pyrrolo[2,3-c]pyridine-4- carboxamide;
6-allyl-N,2-dimethyl-7-oxo-N-(1-(1-phenylethyl)piperidin-4-yl)-6,7-dihydro-1H-pyrrolo[2,3-c]pyridine-4-carboxamide
ChEMBLCHEMBL4077529
DrugBank
ZINC
PDB chain5v84 Chain B Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5v84 GNE-886: A Potent and Selective Inhibitor of the Cat Eye Syndrome Chromosome Region Candidate 2 Bromodomain (CECR2).
Resolution2.7 Å
Binding residue
(original residue number in PDB)
P458 F459 V463 Y467 A468 C510 N514 Y520
Binding residue
(residue number reindexed from 1)
P21 F22 V26 Y30 A31 C73 N77 Y83
Annotation score1
Binding affinityBindingDB: IC50=190nM
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0006338 chromatin remodeling
Cellular Component
GO:0090537 CERF complex

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:5v84, PDBe:5v84, PDBj:5v84
PDBsum5v84
PubMed28740608
UniProtQ9BXF3|CECR2_HUMAN Chromatin remodeling regulator CECR2 (Gene Name=CECR2)

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