Structure of PDB 5uj0 Chain B Binding Site BS01

Receptor Information
>5uj0 Chain B (length=142) Species: 10665 (Tequatrovirus T4) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SKPKAVIFDVDGTLAKMGRGPYDLEKCDTDVINPMVVELSKMYALMGYQI
VVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVV
KEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASG
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5uj0 Chain B Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5uj0 Truncated T4Pnk covalently bound to BeF3
Resolution2.3 Å
Binding residue
(original residue number in PDB)		X165 D167 D278
Binding residue
(residue number reindexed from 1)		X9 D11 D121
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) D165
Catalytic site (residue number reindexed from 1) D9
Enzyme Commision number 2.7.1.78: polynucleotide 5'-hydroxyl-kinase.
3.1.3.34: deoxynucleotide 3'-phosphatase.
Gene Ontology
Molecular Function
GO:0047846 deoxynucleotide 3'-phosphatase activity

View graph for
Molecular Function
External links
PDB RCSB:5uj0, PDBe:5uj0, PDBj:5uj0
PDBsum5uj0
PubMed
UniProtP06855|KIPN_BPT4 Polynucleotide kinase (Gene Name=pseT)

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