Structure of PDB 5oaw Chain B Binding Site BS01

Receptor Information

>5oaw Chain B (length=499) Species: 293939 (Aspergillus lentulus)

SPARKAISDAALQYLNTVVYAVGLLATLRSKKLSGQWIGVMVTANGVKLV
DPMGEMLWEAYATKLANAPLEDVYDELVKEDVSMNPARVVFARDTRASGS
RLIGVLSAALTATEAEFIDMKFMTTPQLHYVVRCKNTLGTQYEYGEPTEQ
GYYEKLAAAFKRVMRGVKVKGSLTVDCANGVGGPKLRELIKYLPEDTGLD
IKIVNDDVINPDSLNFECGADYVKTKQRAPPSSKASILDRCASLDGDADR
ILYYFLDEGNVFRLLDGDRIATLAASFIGDLARSAGIAQKLKIGVVQTAY
ANGSSTEYIEKVLKLPSVCTNTGVKHLHHAAMRFDVGVYFEANGHGTITF
SENALKTIKNTEPQSPAQQRSLECLQALTDLINQAVGDAISDMLLVEAIL
AHKGWTPKEWLATYTDLPSRLVRVEVAERSIFKAYDAERKLESPPGLQAK
IDSLQSRYNKGRSFARASGTEDAVRVYAEAASRSEADDLATRVANAVRD

Ligand information

• Ligand ID: 16G
• InChI: InChI=1S/C8H16NO9P/c1-3(10)9-5-7(12)6(11)4(18-8(5)13)2-17-19(14,15)16/h4-8,11-13H,2H2,1H3,(H,9,10)(H2,14,15,16)/t4-,5-,6-,7-,8+/m1/s1
• InChIKey: BRGMHAYQAZFZDJ-PVFLNQBWSA-N
• SMILES:
  CACTVS 3.341: CC(=O)N[CH]1[CH](O)O[CH](CO[P](O)(O)=O)[CH](O)[CH]1O
  OpenEye OEToolkits 1.5.0: CC(=O)NC1C(C(C(OC1O)COP(=O)(O)O)O)O
  ACDLabs 10.04: O=P(O)(O)OCC1OC(O)C(NC(=O)C)C(O)C1O
  CACTVS 3.341: CC(=O)N[C@H]1[C@@H](O)O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]1O
  OpenEye OEToolkits 1.5.0: CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1O)COP(=O)(O)O)O)O
• Formula: C8 H16 N O9 P
• Name: 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose;
  N-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE;
  N-acetyl-6-O-phosphono-alpha-D-glucosamine;
  2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucose;
  2-acetamido-2-deoxy-6-O-phosphono-D-glucose;
  2-acetamido-2-deoxy-6-O-phosphono-glucose
• ZINC: ZINC000004097100
• PDB chain: 5oaw Chain B Residue 601

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5oaw Evidence for substrate-assisted catalysis inN-acetylphosphoglucosamine mutase.
• Resolution: 2.34 Å
• Binding residue (original residue number in PDB): T361 G362 V363 E380 R505 S507 G508 T509 R514
• Binding residue (residue number reindexed from 1): T322 G323 V324 E341 R466 S468 G469 T470 R475
• Annotation score: 3

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sun Nov 24 15:55:38 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5oaw', asym_id = 'B', bs = 'BS01', title = 'Evidence for substrate-assisted catalysis inN-acetylphosphoglucosamine mutase.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5oaw', asym_id='B', bs='BS01', title='Evidence for substrate-assisted catalysis inN-acetylphosphoglucosamine mutase.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0000287,0004610,0005975,0016868', uniprot = '', pdbid = '5oaw', asym_id = 'B'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000287,0004610,0005975,0016868', uniprot='', pdbid='5oaw', asym_id='B')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>