Structure of PDB 5o5y Chain B Binding Site BS01

Receptor Information
>5o5y Chain B (length=449) Species: 523849 (Thermococcus litoralis DSM 5473) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ESLKDRIRLWKRLYVNAFENALNAIPNVKGVLLAYNTNIDAIKYLDADDL
EKRVTEKGKEKVFEIIENPPEKISSIEELLGGILRSIKLGKAMEWFVESE
EVRRYLREWGWDELRIGGQAGIMANLLGGVYRIPTIVHVPQNPKLQAELF
VDGPIYVPVFEGNKLKLVHPKDAIAEEEELIHYIYEFPRGFQVFDVQAPR
ENRFIANADDYNARVYMRREFREGFEEITRNVELAIISGLQVLKEYYPDG
TTYKDVLDRVESHLNILNRYNVKSHFEFAYTANRRVREALVELLPKFTSV
GLNEVELASIMEIIGDEELAKEVLEGHIFSVIDAMNVLMDETGIERIHFH
TYGYYLALTQGGGRQLAFVPTKIVASPKSTVGIGDTISSSAFVSEFGGGG
GVRDALLFASLAAAAKAMKGNLERIEQIRDALSVPTNERAIVLEEELEK
Ligand information
Ligand IDGLC
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-DVKNGEFBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-glucopyranose;
alpha-D-glucose;
D-glucose;
glucose
ChEMBLCHEMBL423707
DrugBank
ZINCZINC000003861213
PDB chain5o5y Chain B Residue 504 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5o5y Protein topology determines substrate-binding mechanism in homologous enzymes.
Resolution1.915 Å
Binding residue
(original residue number in PDB)		D42 E96 G119 G120 I124 H184 D387
Binding residue
(residue number reindexed from 1)		D40 E94 G117 G118 I122 H182 D385
Annotation score5
Enzymatic activity
Enzyme Commision number 2.7.1.-
2.7.1.147: ADP-specific glucose/glucosamine kinase.
Gene Ontology
Molecular Function
GO:0016773 phosphotransferase activity, alcohol group as acceptor
Biological Process
GO:0005975 carbohydrate metabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5o5y, PDBe:5o5y, PDBj:5o5y
PDBsum5o5y
PubMed30251675
UniProtQ7M537|GLKA_THELN ADP-dependent glucose/glucosamine kinase (Gene Name=glkA)

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