Structure of PDB 5ns4 Chain B Binding Site BS01

Receptor Information
>5ns4 Chain B (length=146) Species: 274 (Thermus thermophilus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLRILEKAAQELA
LITGQKPAVTRAKKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRFRGLN
PNSFDGRGNYNLGLREQLGMDIAVVTTAETDEEARALLELLGFPFR
Ligand information
>5ns4 Chain C (length=32) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ugcaccugaccccaugccgaacucagagugca
<<<<<<<<...............>>>.>>>>>
Receptor-Ligand Complex Structure
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PDB5ns4 Crystal Structures of Cyanine Fluorophores Stacked onto the End of Double-Stranded RNA.
Resolution2.4 Å
Binding residue
(original residue number in PDB)		Q66 K67 A69 V92 T93 R95 R96 R98
Binding residue
(residue number reindexed from 1)		Q55 K56 A58 V72 T73 R75 R76 R78
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:5ns4, PDBe:5ns4, PDBj:5ns4
PDBsum5ns4
PubMed29211987
UniProtP41201|RL5_THETH Large ribosomal subunit protein uL5 (Gene Name=rplE)

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