Structure of PDB 5ngy Chain B Binding Site BS01

Receptor Information
>5ngy Chain B (length=1144) Species: 33964 (Leuconostoc citreum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NKTQYFGPDGAQVKGAFQQVKNIYFDAQTGYARQNVGFLDGTAKGFDEQG
NQIKSGIATDLSGNVYYFDASGKMLTGVQNIDGKKYYFDEQGHRRRNYAG
VFNNEFIYFGLDGVGQSAIEYQFEKGLTSQNSVATSHNAAKSYDTKSFTN
VDGFLTANSWYRPTDILRNGTKWEPSTETDFRPLLMTWWPDKEVQANYLN
YMSALGLGDQKIYTGASSQLDLNNAALIVQEAIEKKISLEKSTKWLDDSI
KSFIKSKRKDIQGNLVDTNPGWTIDSETGSTNHLQNGAFIFTNSPLVPEA
NAAEGNRLINRTPSQQTGNHISYASQPYSGDDWGYELLLGNDVDNSNPIV
QAEQLNWIHYLMNFGTITAPQDPDAHLANFDSIRIDAVDNVDADLLQIAG
DYFKAAYQVGENDKNANQHIHILQDWSPNDVWYNQQVNGNSQLTMDATMQ
NQLLASLTRPITSRDSMKSFTKDALLVHRTADNSYNQAVPNYSFIRAHDS
EVQTIIAKIISDKHPDLYPTVDKALLAKDSALYDEAFTEYNADMQKISSQ
KQYTHNNMPSAYAILLTNKDTVPRVYYGDLFTDNGEYMANKTPYYDAITS
LLTARTKFVSGGQSLSVDKNDVLTSVRYGKGALSATDNGSSDTRNQGIGV
IVSNNPNLDLNNDKVTLSMGISHAHQAYRPLLLTNSQGIVAYATDSEVPQ
NLYKTTNDKGELTFDASEIKGYDTVQTSGYLAVWVPVGASDEQDARTIAS
TEKNNGNSVYHSNAALDSQLIYEGFSNFQTVPSKNASADEYANVIIAKHA
ADFNKWGVTSFQMAPQYRSSTDGSFLDAVDTVQNGYAFTDRYDLGFNAAD
GSKNPTKYGTDEDLRNAIKSLHAQKTYDGSSIQVMADFVPDQLYNMPLEQ
AVSVIRTDKYGVNSENPDIQNIIYAANIKSSGTDYQSIYGGKYLAELQKN
PLFKSLFDRIQISTKKTIDPNTRITQWSAKYFNGSNIQGKGINYVLKDWA
SNKYFNVSSNDDMYSRLPKQLMNQESNTGFIVDDIGVKYYSISGYQAKNT
FVEDGNGEWYYFDNDGYMVKSTEESGPLRTVNASSKKYYILPNGVEIRNS
FGQDIQGNTYYFDARGEMVTSQYISDDTQNIYYFNNDGTMAKKG
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5ngy Chain B Residue 1501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5ngy Investigations on the Determinants Responsible for Low Molar Mass Dextran Formation by DSR-M Dextransucrase
Resolution3.7 Å
Binding residue
(original residue number in PDB)		E627 D633 N681 D1182
Binding residue
(residue number reindexed from 1)		E336 D342 N390 D891
Annotation score1
Enzymatic activity
Enzyme Commision number 2.4.1.5: dextransucrase.
Gene Ontology
Molecular Function
GO:0016757 glycosyltransferase activity
GO:0046527 glucosyltransferase activity
GO:0046872 metal ion binding
GO:0047849 dextransucrase activity
Biological Process
GO:0009250 glucan biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5ngy, PDBe:5ngy, PDBj:5ngy
PDBsum5ngy
PubMed
UniProtA0A2H4A2Q1

[Back to BioLiP]