Structure of PDB 5ncd Chain B Binding Site BS01

Receptor Information
>5ncd Chain B (length=206) Species: 1396 (Bacillus cereus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RKVAYLTFDDGPGKYTAELLNTLKQHDAKATFFLIGANVKEFPDLVKREN
AEGHYVGMHSMTHNFAKLYKNGEYVNEMKEDQGLIANIIGKSPKLTRPPY
GSMPGLNEGLRNKVVEGGFKVWDWTIDSLDWRYNKMPVDAAAAQIAQNVL
TNATKPQEVILMHDIHPQSVAAVPAILKGLKEKGYEFEAYHEESHFPVNF
WHDNRM
Ligand information
Ligand IDAHL
InChIInChI=1S/C6H15N5O2/c7-4(5(12)11-13)2-1-3-10-6(8)9/h4,13H,1-3,7H2,(H,11,12)(H4,8,9,10)/t4-/m0/s1
InChIKeyIXHTVNGQTIZAFS-BYPYZUCNSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0[H]/N=C(\N)/NCCC[C@@H](C(=O)NO)N
ACDLabs 10.04O=C(NO)C(N)CCCNC(=[N@H])N
OpenEye OEToolkits 1.5.0[H]N=C(N)NCCCC(C(=O)NO)N
CACTVS 3.341N[C@@H](CCCNC(N)=N)C(=O)NO
CACTVS 3.341N[CH](CCCNC(N)=N)C(=O)NO
FormulaC6 H15 N5 O2
NameN-HYDROXY-L-ARGININAMIDE;
L-ARGININE HYDROXAMATE
ChEMBLCHEMBL376027
DrugBank
ZINC
PDB chain5ncd Chain B Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5ncd Structures of the Peptidoglycan N-Acetylglucosamine Deacetylase Bc1974 and Its Complexes with Zinc Metalloenzyme Inhibitors.
Resolution2.447 Å
Binding residue
(original residue number in PDB)		D76 H126 H130 Y167 H230
Binding residue
(residue number reindexed from 1)		D9 H59 H63 Y100 H163
Annotation score1
Enzymatic activity
Enzyme Commision number 3.5.1.104: peptidoglycan-N-acetylglucosamine deacetylase.
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
Cellular Component
GO:0005886 plasma membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5ncd, PDBe:5ncd, PDBj:5ncd
PDBsum5ncd
PubMed29257674
UniProtQ81EJ6|PGDA2_BACCR Peptidoglycan-N-acetylglucosamine deacetylase BC_1974 (Gene Name=BC_1974)

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