Structure of PDB 5mhm Chain B Binding Site BS01

Receptor Information
>5mhm Chain B (length=683) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PPNNSNAAEDDLPTVELQGVVPRGVNLQEFLNVTSVHLFKERWDTNKVDH
HTDKYENNKLIVRRGQSFYVQIDFSRPYDPRRDLFRVEYVIGRYPQENKG
TYIPVPIVSELQSGKWGAKIVMREDRSVRLSIQSSPKCIVGKFRMYVAVW
TPYGVLRTSRNPETDTYILFNPWCEDDAVYLDNEKEREEYVLNDIGVIFY
GEVNDIKTRSWSYGQFEDGILDTCLYVMDRAQMDLSGRGNPIKVSRVGSA
MVNAKDDEGVLVGSWDNIYAYGVPPSAWTGSVDILLEYRSSENPVRYGQC
WVFAGVFNTFLRCLGIPARIVTNYFSAHDNDANLQMDIFLNVNSKLTKDS
VWNYHCWNEAWMTRPDLPVGFGGWQAVDSTPQENSDGMYRCGPASVQAIK
HGHVCFQFDAPFVFAEVNSDLIYITAHVVENVDATHIGKLIVTKQIGGDG
MMDITDTYKFQEGQEEERLALETALMYGSNVDMDFEVENAVLGKDFKLSI
TFRNNSHNRYTITAYLSANITFYTGVPKAEFKKETFDVTLEPLSFKKEAV
LIQAGEYMGQLLEQASLHFFVTARINETRDVLAKQKSTVLTIPEIIIKVR
GTQMTVIVEFTNPLKETLRNVWVHLDGPGVTRPMKKMFREIRPNSTVQWE
EVCRPWVSGHRKLIASMSSDSLRHVYGELDVQI
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5mhm Structure of active coagulation factor XIII triggered by calcium binding: basis for the design of next-generation anticoagulants.
Resolution2.12 Å
Binding residue
(original residue number in PDB)		Y214 W279 C314 W315 M350 I352 D367 S368 V369 W370 N371 Y372 Q400 L439
Binding residue
(residue number reindexed from 1)		Y200 W265 C300 W301 M336 I338 D349 S350 V351 W352 N353 Y354 Q382 L421
Enzymatic activity
Catalytic site (original residue number in PDB) W279 C314 H373 D396 Y560
Catalytic site (residue number reindexed from 1) W265 C300 H355 D378 Y523
Enzyme Commision number 2.3.2.13: protein-glutamine gamma-glutamyltransferase.
Gene Ontology
Molecular Function
GO:0003810 protein-glutamine gamma-glutamyltransferase activity
GO:0005515 protein binding
GO:0016746 acyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0007596 blood coagulation
GO:0018149 peptide cross-linking
GO:0072378 blood coagulation, fibrin clot formation
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0031093 platelet alpha granule lumen
GO:0062023 collagen-containing extracellular matrix
GO:0072562 blood microparticle
GO:1990234 transferase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5mhm, PDBe:5mhm, PDBj:5mhm
PDBsum5mhm
PubMed
UniProtP00488|F13A_HUMAN Coagulation factor XIII A chain (Gene Name=F13A1)

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