Structure of PDB 5m8b Chain B Binding Site BS01

Receptor Information
>5m8b Chain B (length=325) Species: 1580 (Levilactobacillus brevis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VQAQDYINPLIVQRADPYIYKHTDGYYYFTASVPAYNLIEIRRAKTLNGL
ANAAPRTIWRKHPDGSGAMSQLIWAPELHYIDGKWFIYFAASHTKEFDHN
GMFQHRMYCIECDNPDPMRDEADWTEHGQIETPLDTFALDATVFEAQKKL
YYVWAQKDPAIKGNSNIYIAEMANPWTLKTKPVMLTKPEYDWETKIFWVN
EGPAVLHRNGRFFLTYSASATDENYAMGMLTVAEDADLLDPTSWSKSETP
VFQSNMPIKQFGPGHNSFTVAEDGETDMLVYHCRNYTDIKGDPLYDPNRH
TMVQPFTWNDDGTPNFGKPVPYNYK
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5m8b Chain B Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5m8b Crystal structure of alpha-L-arabinofuranosidase from Lactobacillus brevis
Resolution1.9 Å
Binding residue
(original residue number in PDB)		E78 H266
Binding residue
(residue number reindexed from 1)		E77 H265
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:5m8b, PDBe:5m8b, PDBj:5m8b
PDBsum5m8b
PubMed
UniProtA0A5B7Y0Z3

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