Structure of PDB 5m7p Chain B Binding Site BS01

Receptor Information
>5m7p Chain B (length=437) Species: 641140 (Brucella abortus str. 2308 A) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MAADILVVDDEVDIRDLVAGILSDEGHETRTAFDADSALAAINDRAPRLV
FLDIWLDGLALLDEIKKQHPELPVVMISGHGNIETAVSAIRRGAYDFIEK
PFKADRLILVAERALETSKLKREVSDLRKRTGDQLELVGTSLAMNQLRQT
IERVAPTNSRIMITGPSGAGKELVARAIHAQSSRANGPFVTVNAATITPE
RMEIELFGTEMERKVGALEEAHGGILYLDEVADMPRETQNKILRVLVDQQ
FERVGGTKRVKVDVRIISSTAQNLEGMIAEGTFREDLFHRLSVVPVQVPA
LAARREDIPSLVEFFMKQIAEQAGIKPRKIGPDAMAVLQAHSWPGNLRQL
RNNVERLMILTRGDDPDELVTADLLPAEITESDQHIMALPLREARERFEK
EYLIAQINRFGGNISRTAEFVGMERSALHRKLKSLGV
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5m7p Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5m7p Three-Dimensional Structure of Full-Length NtrX, an Unusual Member of the NtrC Family of Response Regulators.
Resolution2.36 Å
Binding residue
(original residue number in PDB)		D9 E11 D53
Binding residue
(residue number reindexed from 1)		D9 E11 D53
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 08:52:51 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5m7p', asym_id = 'B', bs = 'BS01', title = 'Three-Dimensional Structure of Full-Length NtrX,...Member of the NtrC Family of Response Regulators.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5m7p', asym_id='B', bs='BS01', title='Three-Dimensional Structure of Full-Length NtrX,...Member of the NtrC Family of Response Regulators.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0000160,0005524,0006355,0008134,0016887,0043565', uniprot = '', pdbid = '5m7p', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000160,0005524,0006355,0008134,0016887,0043565', uniprot='', pdbid='5m7p', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>