Structure of PDB 5lfc Chain B Binding Site BS01

Receptor Information
>5lfc Chain B (length=1148) Species: 33964 (Leuconostoc citreum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DNNKTQYFGPDGAQVKGAFQQVNKNIYFDAQTGYARQNVGFLDGTAKGFD
EQGNQIKSGIATDLSGNVYYFDASGKMLTGVQNIDGKKYYFDEQGHRRRN
YAGVFNNEFIYFGLDGVGQSAIEYQFEKGLTSQNSVATSHNAAKSYDTKS
FTNVDGFLTANSWYRPTDILRNGTKWEPSTETDFRPLLMTWWPDKEVQAN
YLNYMSALGLGDQKIYTGASSQLDLNNAALIVQEAIEKKISLEKSTKWLD
DSIKSFIKSKRKDIQGNLVDTNPGWTIDSETGSTNHLQNGAFIFTNSPLV
PEANAAEGNRLINRTPSQQTGNHISYASQPYSGDDWGYELLLGNDVDNSN
PIVQAEQLNWIHYLMNFGTITAPQDPDAHLANFDSIRIDAVDNVDADLLQ
IAGDYFKAAYQVGENDKNANQHIHILEDWSPNDVWYNQQVNGNSQLTMDA
TMQNQLLASLTRPITSRDSMKSFTKDALLVHRTADNSYNQAVPNYSFIRA
HDSEVQTIIAKIISDKHPDLYPTVDKALLAKDSALYDEAFTEYNADMQKI
SSQKQYTHNNMPSAYAILLTNKDTVPRVYYGDLFTDNGEYMANKTPYYDA
ITSLLTARTKFVSGGQSLSVDKNDVLTSVRYGKGALSATDNGSSDTRNQG
IGVIVSNNPNLDLNNDKVTLSMGISHAHQAYRPLLLTNSQGIVAYATDSE
VPQNLYKTTNDKGELTFDASEIKGYDTVQTSGYLAVWVPVGASDEQDART
IASTEKNNGNSVYHSNAALDSQLIYEGFSNFQTVPSKNASADEYANVIIA
KHAADFNKWGVTSFQMAPQYRSSTDGSFLDAVDTVQNGYAFTDRYDLGFN
AADGSKNPTKYGTDEDLRNAIKSLHAQKTYDGSSIQVMADFVPDQLYNMP
LEQAVSVIRTDKYGVNSENPDIQNIIYAANIKSSGTDYQSIYGGKYLAEL
QKNPLFKSLFDRIQISTKKTIDPNTRITQWSAKYFNGSNIQGKGINYVLK
DWASNKYFNVSSNDDMYSRLPKQLMNQESNTGFIVDDIGVKYYSISGYQA
KNTFVEDGNGEWYYFDNDGYMVKSTEESGPLRTVNASSKKYYILPNGVEI
RNSFGQDIQGNTYYFDARGEMVTSQYISDDTQNIYYFNNDGTMAKKGG
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5lfc Chain B Residue 2001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5lfc Investigations on the Determinants Responsible for Low Molar Mass Dextran Formation by DSR-M Dextransucrase
Resolution3.2 Å
Binding residue
(original residue number in PDB)		E627 D633 N681 D1182
Binding residue
(residue number reindexed from 1)		E339 D345 N393 D894
Annotation score1
Enzymatic activity
Enzyme Commision number 2.4.1.5: dextransucrase.
Gene Ontology
Molecular Function
GO:0016757 glycosyltransferase activity
GO:0046527 glucosyltransferase activity
GO:0046872 metal ion binding
GO:0047849 dextransucrase activity
Biological Process
GO:0009250 glucan biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5lfc, PDBe:5lfc, PDBj:5lfc
PDBsum5lfc
PubMed
UniProtA0A2H4A2M1

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