Structure of PDB 5ld9 Chain B Binding Site BS01

Receptor Information
>5ld9 Chain B (length=126) Species: 186497 (Pyrococcus furiosus DSM 3638) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
STLIIPQHYLRAILKVVSSSSVEVCGFLFGKENRVLKVRFIRNRLNSPVE
FEMDPEEMLKALEEAEQENLEVVGIFHSHIACPPIPSGKDLEGMKRWPVI
WLIVNEKGEYKAWILNKISEVKIVVE
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain5ld9 Chain B Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5ld9 Structural Insight into Ubiquitin-Like Protein Recognition and Oligomeric States of JAMM/MPN(+) Proteases.
Resolution1.733 Å
Binding residue
(original residue number in PDB)		H88 H90 D101
Binding residue
(residue number reindexed from 1)		H77 H79 D90
Annotation score4
Enzymatic activity
Enzyme Commision number 3.4.19.15: desampylase.
Gene Ontology
Molecular Function
GO:0008233 peptidase activity
GO:0008235 metalloexopeptidase activity
GO:0008237 metallopeptidase activity
GO:0008270 zinc ion binding
GO:0046872 metal ion binding
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:5ld9, PDBe:5ld9, PDBj:5ld9
PDBsum5ld9
PubMed28479062
UniProtQ8U1Y4|JAMM1_PYRFU Desampylase (Gene Name=PF1070)

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