Structure of PDB 5l12 Chain B Binding Site BS01

Receptor Information

>5l12 Chain B (length=154) Species: 357348 (Burkholderia pseudomallei 1106a) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MDFRIGEGYDVHQLVPGRPLIIGGVTIPYERGLLADVLLHAITDALFGAA
ALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQA
PKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAEAAA
LVVR

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

5l12 Chain B Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5l12 Enzyme Engineering for the Development of a High-Throughput Temperature Screen of Burkholderia pseudomallei IspF Inhibitors
Resolution	1.716 Å
Binding residue (original residue number in PDB)	D10 H12 H44
Binding residue (residue number reindexed from 1)	D10 H12 H40
Annotation score	1

Enzymatic activity

Enzyme Commision number

4.6.1.12: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.

Gene Ontology

	Molecular Function
GO:0008685	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
GO:0016829	lyase activity
GO:0046872	metal ion binding

	Biological Process
GO:0008299	isoprenoid biosynthetic process
GO:0016114	terpenoid biosynthetic process
GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway

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Biological Process

External links

PDB	RCSB:5l12, PDBe:5l12, PDBj:5l12
PDBsum	5l12
PubMed
UniProt	A3NWD9\|ISPF_BURP0 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (Gene Name=ispF)

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