Structure of PDB 5kob Chain B Binding Site BS01

Receptor Information
>5kob Chain B (length=161) Species: 266265 (Paraburkholderia xenovorans LB400) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MIREILKMGDPRLLRIADPVDHFDTPELHELVKDMFETMHDANGAGLAAP
QIGVNLQVVIFGFGPPVPETVLINPTITPVSQDMEEGWEGCLSVPGLRGA
VSRFSMIKYHGFDQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRINDF
AKFGFTEVLFP
Ligand information
Ligand IDFE2
InChIInChI=1S/Fe/q+2
InChIKeyCWYNVVGOOAEACU-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Fe+2]
CACTVS 3.341[Fe++]
FormulaFe
NameFE (II) ION
ChEMBL
DrugBankDB14510
ZINC
PDB chain5kob Chain B Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5kob Crystal structure of a peptide deformylase from Burkholderia xenovorans
Resolution1.6 Å
Binding residue
(original residue number in PDB)		Q51 C99 H141 H145
Binding residue
(residue number reindexed from 1)		Q51 C91 H133 H137
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) G46 Q51 C99 L100 H141 E142 H145
Catalytic site (residue number reindexed from 1) G46 Q51 C91 L92 H133 E134 H137
Enzyme Commision number 3.5.1.88: peptide deformylase.
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0018206 peptidyl-methionine modification

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5kob, PDBe:5kob, PDBj:5kob
PDBsum5kob
PubMed
UniProtQ13XB1

[Back to BioLiP]