Structure of PDB 5knk Chain B Binding Site BS01

Receptor Information
>5knk Chain B (length=324) Species: 1217634 (Acinetobacter baumannii NIPH 410) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PDSKSMNYQLLKTFSRQPIQFGRFLARLLAGLVNTLKITRTSKSIELNLR
IALPYLTPQQRIAITEKAVRNELTSYFEFLSIWGSSNSKNISRIHRIEGE
HFFHEALAAKKGVVLIVPHFGTWAVMNAWCAQFTSMTILYKPVKNADADR
FVREARSREQANLVPTDESGVRQIFKALKQGETTVILPDHTPNVGGDMVN
YFGVPLASSNLSAKLIQKTKAKALFLYAIRNENDGFTMHIEPMDEKIYEG
TADDGTYVIHQAIEQLIYQYPEHYHWSYKRFKANPALDNIYNIDPTEALK
IVDRLKAEALKTSTQPEPIQTSVM
Ligand information
Ligand ID11A
InChIInChI=1S/C11H22O2/c1-2-3-4-5-6-7-8-9-10-11(12)13/h2-10H2,1H3,(H,12,13)
InChIKeyZDPHROOEEOARMN-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341CCCCCCCCCCC(O)=O
OpenEye OEToolkits 1.5.0CCCCCCCCCCC(=O)O
ACDLabs 10.04O=C(O)CCCCCCCCCC
FormulaC11 H22 O2
NameUNDECANOIC ACID
ChEMBLCHEMBL108030
DrugBankDB16857
ZINCZINC000001586297
PDB chain5knk Chain B Residue 410 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5knk Structure-guided enzymology of the lipid A acyltransferase LpxM reveals a dual activity mechanism.
Resolution1.9 Å
Binding residue
(original residue number in PDB)		H122 D192 H193 Y204 Y277 H278 W279 Y281 R283
Binding residue
(residue number reindexed from 1)		H119 D189 H190 Y201 Y274 H275 W276 Y278 R280
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 22 06:06:09 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5knk', asym_id = 'B', bs = 'BS01', title = 'Structure-guided enzymology of the lipid A acyltransferase LpxM reveals a dual activity mechanism.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5knk', asym_id='B', bs='BS01', title='Structure-guided enzymology of the lipid A acyltransferase LpxM reveals a dual activity mechanism.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0016020,0016740', uniprot = '', pdbid = '5knk', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016020,0016740', uniprot='', pdbid='5knk', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>