Structure of PDB 5kh0 Chain B Binding Site BS01

Receptor Information
>5kh0 Chain B (length=363) Species: 391009 (Thermosipho melanesiensis BI429) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RKYIAITGRRNVGKSSFMNALIGQEVSIVKSMELSPVGPITLIDTPKKAK
KSLYRADCGILIVDDIPGNFEEQIIKLFKELEIPYFIAINKIDTIDHENI
EKEYKKYNVPILKVSALKKIGFEKIGKTINSILPKDDEIPYLSDLIDGGD
LVILVVPIDLGAPKGRLIMPQVHAIREGLDREALVLVVKERELRYAIENI
GIKPRLVVTDSQSVMKVVSDVPEDIDLTTFSILESRYRGDLEYFVESVKA
VENLKDGDTVIIMEGCTHRPLTEDIGRVKIPRWLTNHTGAALNLKVWAGV
DMPELSEIEDAKLIIHCGGCVMNRNNMMRRVRMFKRLNIPMTNYGVVISY
LHGVLERAIKPLM
Ligand information
Ligand IDSF4
InChIInChI=1S/4Fe.4S
InChIKeyLJBDFODJNLIPKO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7[S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
CACTVS 3.385S1[Fe]S[Fe]1.S2[Fe]S[Fe]2
FormulaFe4 S4
NameIRON/SULFUR CLUSTER
ChEMBL
DrugBank
ZINC
PDB chain5kh0 Chain B Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5kh0 Structural and functional characterization of the hydrogenase-maturation HydF protein.
Resolution2.8 Å
Binding residue
(original residue number in PDB)		E296 G297 C298 E305 C349 C352
Binding residue
(residue number reindexed from 1)		E264 G265 C266 E273 C317 C320
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005525 GTP binding
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0002098 tRNA wobble uridine modification
GO:0030488 tRNA methylation
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5kh0, PDBe:5kh0, PDBj:5kh0
PDBsum5kh0
PubMed28553946
UniProtA6LMQ7

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