Structure of PDB 5kc1 Chain B Binding Site BS01

Receptor Information
>5kc1 Chain B (length=57) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NSKNSEMKINLRLEQFKKELVLYEQKKFKEYGMKIDEITKENKKLANEIG
RLRERWD
Ligand information
>5kc1 Chain A (length=29) Species: 4932 (Saccharomyces cerevisiae) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
LSPINDPLLMSILNRLQFNLNNDIQLKTE
Receptor-Ligand Complex Structure
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PDB5kc1 Characterization of Atg38 and NRBF2, a fifth subunit of the autophagic Vps34/PIK3C3 complex.
Resolution2.2 Å
Binding residue
(original residue number in PDB)		S156 S159 R166 F170 E173 Y177
Binding residue
(residue number reindexed from 1)		S2 S5 R12 F16 E19 Y23
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
GO:0005515 protein binding
GO:0042802 identical protein binding
Biological Process
GO:0006914 autophagy
GO:0016236 macroautophagy
GO:0046854 phosphatidylinositol phosphate biosynthetic process
Cellular Component
GO:0000407 phagophore assembly site
GO:0005737 cytoplasm
GO:0005774 vacuolar membrane
GO:0016020 membrane
GO:0034045 phagophore assembly site membrane
GO:0034271 phosphatidylinositol 3-kinase complex, class III, type I

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Cellular Component
External links
PDB RCSB:5kc1, PDBe:5kc1, PDBj:5kc1
PDBsum5kc1
PubMed27630019
UniProtQ05789|ATG38_YEAST Autophagy-related protein 38 (Gene Name=ATG38)

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