Structure of PDB 5jsp Chain B Binding Site BS01

Receptor Information
>5jsp Chain B (length=190) Species: 644107 (Ruegeria lacuscaerulensis ITI-1157) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MTLENVLEAARHLHQTLPALSEFGNWPTDLTATGLQPRAIPATPLVQALD
QPGSPRTTGLVQAIRSAAHLAHWKRTYTEAEVGADFRNRYGYFELFGPTG
HFHSTQLRGYVAYWGAGLDYDWHSHQAEELYLTLAGGAVFKVDGERAFVG
AEGTRLHASWQSHAMSTGDQPILTFVLWRGEGLNALPRMD
Ligand information
Ligand IDFE
InChIInChI=1S/Fe/q+3
InChIKeyVTLYFUHAOXGGBS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
CACTVS 3.341
OpenEye OEToolkits 1.5.0		[Fe+3]
FormulaFe
NameFE (III) ION
ChEMBL
DrugBankDB13949
ZINC
PDB chain5jsp Chain B Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5jsp New Mechanistic Insight from Substrate- and Product-Bound Structures of the Metal-Dependent Dimethylsulfoniopropionate Lyase DddQ.
Resolution2.2 Å
Binding residue
(original residue number in PDB)		H123 H125 E129 Y131 H163
Binding residue
(residue number reindexed from 1)		H123 H125 E129 Y131 H163
Annotation score1
Enzymatic activity
Enzyme Commision number 4.4.1.3: dimethylpropiothetin dethiomethylase.
Gene Ontology
Molecular Function
GO:0016829 lyase activity
GO:0046872 metal ion binding
GO:0047869 dimethylpropiothetin dethiomethylase activity

View graph for
Molecular Function
External links
PDB RCSB:5jsp, PDBe:5jsp, PDBj:5jsp
PDBsum5jsp
PubMed27755868
UniProtD0CY60|DDDQ_RUELI Dimethylsulfonioproprionate lyase DddQ (Gene Name=dddQ)

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