Structure of PDB 5jsd Chain B Binding Site BS01

Receptor Information
>5jsd Chain B (length=548) Species: 38018 (Bacteriophage sp.) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QTQYYLKYFNPEIVYPKNARIMLDNGDIVRSTVVNNTSNPNVDMTGWVKV
SSVSQIFDETYNITQSVINGNLITVDNFGAKGDGVTDDSAAFQAYCDSAL
TGQNLYLGAKGRYILKNQVDLKGKGLVGNGCGKVSEFYYNLGCIDVDGSS
PDLQGKTAFINCGPTIQNLTARCSNGAGKQVSFIEIDGYLANIDHITLIN
FYNQIVVKQALVGFNFTNAWLYYSQNAGIYCEDPLNRVSTTGTFHNIYFQ
LGDGHAMIFDRDVHGCDFDNIIFESMNGGIKARTVAHCGFGKFWCENLKT
ATSKDWLEVTGANSCYGNSFTGYVKLLGGWTSKTSPTLDSLPTNNYGGVS
VSAEGISIVNAGNKAKMLMLPSGFKTGNATIDETHISSSTVTPLVKRRVI
GADSSGAQYLASDTYTKLSRKWGTYNHGSNNAGAFYAPMMLTYDQSFSTP
QNNNGWKIVKESTGVYRVERVSGNTSVITNGHIVVGSPLMGSRLGTGTGA
THGIQMIETYAGSWTSYTEAAGFKVFWRDSSNALVDPHRFTVAFTATS
Ligand information
Ligand IDGAL
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3+,4+,5-,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-FPRJBGLDSA-N
SMILES
SoftwareSMILES
CACTVS 3.370OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O
OpenEye OEToolkits 1.7.2C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.370OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
ACDLabs 12.01OC1C(O)C(OC(O)C1O)CO
OpenEye OEToolkits 1.7.2C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
FormulaC6 H12 O6
Namebeta-D-galactopyranose;
beta-D-galactose;
D-galactose;
galactose
ChEMBLCHEMBL300520
DrugBank
ZINCZINC000002597049
PDB chain5jsd Chain D Residue 5 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5jsd Structural basis for fragmenting the exopolysaccharide of Acinetobacter baumannii by bacteriophage Phi AB6 tailspike protein
Resolution1.48 Å
Binding residue
(original residue number in PDB)		E313 N314
Binding residue
(residue number reindexed from 1)		E296 N297
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0046718 symbiont entry into host cell
GO:0098994 symbiont entry into host cell via disruption of host cell envelope
GO:0098996 symbiont entry into host cell via disruption of host cell glycocalyx
Cellular Component
GO:0098015 virus tail

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5jsd, PDBe:5jsd, PDBj:5jsd
PDBsum5jsd
PubMed28209973
UniProtA0A159BDB5

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