Structure of PDB 5jrk Chain B Binding Site BS01

Receptor Information
>5jrk Chain B (length=677) Species: 317655 (Sphingopyxis alaskensis RB2256) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SKGRPWTLEDILTVPEVNEIALSDNGRLAIYAAEIADLDAGKPRSHIRIV
DVETGRTKELLTVDTIKSLRSVPGTQDWSALVDLGEGQQLYRIDTEGKLL
PLIVNPNPVPVGKADMSFPLGGGIRPSHIGILDYDWSPDGKWLWYSQLRA
KSDGPRVRFDEEVTALLGRRRSTIDVEVDFFLRNPEGDTTRIMARPSTDR
VATRGGGRVLWRGNEVQFRIEFVAWNRVNRTVRTLAKSILVGPRGGQLST
SGLGSDRELIETSAEGRPHSYGRVAFDIGDSRSAGWKRSRDGKRVVIGTR
GLGDARYGLALIDKTGVRELRADASLTRCGFDGMLRSAICVEEGMSRPPR
LVRVDLGTDKITDLGPISPRHEEIEPLQTIARTFVSRDGYWSSGYVLLPR
GHRAADRHPAVVVTHGTDADDRFAEPANQWNYPVQLLAERGYVVLLLNDP
SPGQSKDLMDAMHAWLRGKGPPDPETVQQKLWLTGVHSFEDAVTELAAEG
LIDPARVGIAGYSRGSQMVNVTVTNSKMFRAASSGDGGFLEPAGYATGRS
SYDAVYGGAPLSDNIERWRRFAPSLNADKVCAAVLQQVASASPSQIELFE
ALRAAGVATQISYYPGATAASDETHVFYLTTNRLRAMRENIAWFDYWLLD
KRDADAPFPDHVVKWDRLKKNLPDRCA
Ligand information
Ligand IDBGC
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-VFUOTHLCSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.370OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O
CACTVS 3.370OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.6C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
ACDLabs 12.01OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namebeta-D-glucopyranose;
beta-D-glucose;
D-glucose;
glucose
ChEMBLCHEMBL1614854
DrugBankDB02379
ZINCZINC000003833800
PDB chain5jrk Chain B Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5jrk Structure and Mechanism of the Sphingopyxin I Lasso Peptide Isopeptidase.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		D369 E388 I407 D409
Binding residue
(residue number reindexed from 1)		D323 E342 I361 D363
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0008236 serine-type peptidase activity
Biological Process
GO:0006508 proteolysis

View graph for
Molecular Function
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Biological Process
External links
PDB RCSB:5jrk, PDBe:5jrk, PDBj:5jrk
PDBsum5jrk
PubMed27611791
UniProtQ1GQ33

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