Structure of PDB 5joz Chain B Binding Site BS01

Receptor Information
>5joz Chain B (length=504) Species: 28116 (Bacteroides ovatus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KTFRNPIITGMNPDPSICRVGDDFYLVTSTFEYFPGLPVYHSKDLVHWKL
IGHALSRPENNPLMGCNASTGGQYAPTLRYHDGTFYVIGTNYGGKGSQGV
FYVTAKNPAGPWSDPVWVGNWYVDPSIEFIDGKMYFLSPDNQGSFLLGVM
DPETGTFVEALRKVASGLGGSSPEGPHFYKIGDYYYIMSAEGGTGYEHRE
VIQRSKSPWGPYEPSPVNPVLSNMNCPDHPFQAIGHADLVQLKDGSWWAV
CLGIRPVNGKYQHLGRETFLAPVTWDADGWPKVGKDGVVQETYLFPNLPS
HVWMEQPVRDDFDQETLGLDWTFIRNPAHSFWSLTEKPGSLRLKGTAINF
TTNDSPSFIGRRQAAFNLTASAKVNFIPKVENEEAGLVVRADDKNHYDLL
ITERNGQRVAMIRKTLKDKVVDTTCKELPATGEVILSITATETTYTFEIK
AAHVSAILGTASTRDVSNEVVGGFTGVFIGMYASGNGQANTNPADFDWFD
FRCL
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5joz Chain B Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5joz Structural dissection of a complex Bacteroides ovatus gene locus conferring xyloglucan metabolism in the human gut.
Resolution2.28 Å
Binding residue
(original residue number in PDB)		D335 G363 D521
Binding residue
(residue number reindexed from 1)		D311 G339 D497
Annotation score4
Enzymatic activity
Enzyme Commision number 3.2.1.55: non-reducing end alpha-L-arabinofuranosidase.
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0046556 alpha-L-arabinofuranosidase activity
Biological Process
GO:0000272 polysaccharide catabolic process
GO:0005975 carbohydrate metabolic process
GO:0085030 symbiotic process benefiting host
GO:2000899 xyloglucan catabolic process
Cellular Component
GO:0042597 periplasmic space

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5joz, PDBe:5joz, PDBj:5joz
PDBsum5joz
PubMed27466444
UniProtA7LXU0|GH43B_BACO1 Non-reducing end alpha-L-arabinofuranosidase BoGH43B (Gene Name=BACOVA_02656)

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