Structure of PDB 5jnb Chain B Binding Site BS01

Receptor Information
>5jnb Chain B (length=324) Species: 6239 (Caenorhabditis elegans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GAMDVLSEKIWDYHNKVSQTDEMLQRKLHLRDMLYTAISPVFPLSGLYVV
GSSLNGFGNNSSDMDLCLMITNKDLDQKNDAVVVLNLILSTLQYEKFVES
QKLILAKVPILRINFAAPFDDITVALNANNSVAIRNTHLLCYYSSYDWRV
RPLVSVVKEWAKRKGINDANKSSFTSYSLVLMVIHFLQCGPTKVLPNLQQ
SYPNRFSNKVDVRTLNVTMALEEDQSLSEKTTLGELLIGFLDYYANEFNY
DRDAISIRQGRRVERASPHFWRSQWRCVCIEEPFTAHSIYDEMVFEAIKK
AFREAHGELQHNHDLDKLMECEPI
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5jnb Chain B Residue 1005 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5jnb Structural basis for the antagonistic roles of RNP-8 and GLD-3 in GLD-2 poly(A)-polymerase activity.
Resolution2.486 Å
Binding residue
(original residue number in PDB)		S595 D608
Binding residue
(residue number reindexed from 1)		S52 D65
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.19: polynucleotide adenylyltransferase.
External links
PDB RCSB:5jnb, PDBe:5jnb, PDBj:5jnb
PDBsum5jnb
PubMed27288313
UniProtO17087|GLD2_CAEEL Poly(A) RNA polymerase gld-2 (Gene Name=gld-2)

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