Structure of PDB 5jbd Chain B Binding Site BS01

Receptor Information
>5jbd Chain B (length=855) Species: 1598 (Limosilactobacillus reuteri) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MGPGTWENMAFAQDSSAINNIDGYLSYTDWYRPYGTSQDGKTWYKTTAMD
WRPLLMYIWPSKDVQAQFIKYFVNNGYENANYGLTKDTVANINKDTNTTV
LANMAQNLRYVIEQSIAANKGTSKLANDINSFAATVPELSASSELSLQSM
PNYRPDKSGTIDSDQVIFVNNNSKDPRKGNTSYADSNYRLMNRTINNQAG
NNNSDNSPELLVGNDIDNSNPVVQAENLNWEYFLLNYGKLMGYNPDGNFD
GFRVDAADNIDADVLDQMGQLMNDMYHTKGNPQNANDHLSYNEGYHSGAA
QMLNEKGNPQLYMDSGEFYTLENVLGRANNRDNIGNLITNSIVNRQNDTT
ENEATPNWSFVTNHDQRKNLINRLIIKDHSNIPDIMGSAYKVEYANQAWQ
EFYADQEKTNKQYAQYNVPAQYAILLSNKDTVPQVYYGDLYNETAQYMQE
KSIYYDAITTLMRARKQFVSGGQTMTKLNNNLLASVRYGKGVVDANSNGT
DKLSRTSGMAVLVGNDSNMAQQSVAINMGRAHANQQYRNLIDTTENGLTY
DADNSENPAILTTDSNGILKVTVKGYSNPYVSGYLGVWVPVISGDQDVTT
NASDVVANKEKTFESNAALDSHMIYEDFSLFQPEPTSVENHAYNVIAKNA
SLFSDLGITDFWMAPAYTPFGRSRYNEGYSMTDRYNLGTTANPTKYGSGE
ELANTIAALHKAGLKVQEDIVMNQMIGFSGQEAVTVTRTNNRGMQIHVNG
QTYANQIYFAYTTGGGNGQETYGGKYLAELQKNYPDLFTTKAISTGVAPD
PTVRINKWSAKYQNGTSLQNIGIGLAVKLANGDYAYLNSGDNKAFNTLLP
TAISL
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5jbd Chain B Residue 1701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5jbd Crystal Structure of 4,6-alpha-Glucanotransferase Supports Diet-Driven Evolution of GH70 Enzymes from alpha-Amylases in Oral Bacteria.
Resolution1.8 Å
Binding residue
(original residue number in PDB)		E969 D975 N1019 N1483
Binding residue
(residue number reindexed from 1)		E209 D215 N259 N723
Annotation score1
Enzymatic activity
Enzyme Commision number 2.4.1.5: dextransucrase.
Gene Ontology
Molecular Function
GO:0046527 glucosyltransferase activity
Biological Process
GO:0009250 glucan biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5jbd, PDBe:5jbd, PDBj:5jbd
PDBsum5jbd
PubMed28065507
UniProtQ5SBM0

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