Structure of PDB 5imq Chain B Binding Site BS01

Receptor Information
>5imq Chain B (length=591) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MDLSRIRNFSIIAHVDHGKSTLADRILELTHAVSDREMREQFLDSLELER
ERGITIKASAVRVTYRAKDGEEYVFHLIDTPGHVDFTYEVSRALAAVEGV
LLVVDASQGVEAETLAKFYMALEHGHVIIPVINKIDLPNARPLEVALEVE
EVLGLPADEAIFASGKTGEGVEEILEAIVQRIPPPKGDPEAPLKALIFDS
VYDAYQGVIPYLRLFEGRVRPGDRIRIYSTGKEFTVDKVGVFTPQGLVAT
EALEAGEVGWLVAAIRDIHDVQVGDTITLADRPTPSPYPGFRPAKPVVFA
GLYPVGKLRDALEKLKLNDAALTFEPESSTALGFGFRCGFLGLLHAEIVQ
ERLEREFGLSLIATAPSVVYKVRLKSGEEVEVHNPADLPDPTRIEEILEP
YVKLTIFTPEEYVGSLMQLLQEKRGRLVNMNYLPGAQKRVELVYEAPFAE
ILYDFHDRLKSVSRGYASMDYEQAGYRPGDLVKVNVLVHGEVVDALTFIA
HREKAYTMARAIVDKLAEVIPRQLFEVPIQAAIGGKIIARATVKALRKDV
LAKCYGGDVTRKKKLLEKQKEGKKRLKAIGKVEVPQEAFLA
Ligand information
>5imq Chain 4 (length=77) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucg
ucgguucaaauccggcccccgcaacca
.<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<
<<<<.......>>>>>>>>>>>.....
Receptor-Ligand Complex Structure
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PDB5imq Structure of the GTP Form of Elongation Factor 4 (EF4) Bound to the Ribosome
Resolution3.8 Å
Binding residue
(original residue number in PDB)		R569 K572
Binding residue
(residue number reindexed from 1)		R561 K564
Enzymatic activity
Catalytic site (original residue number in PDB) D19 K22 S23 T58 H86
Catalytic site (residue number reindexed from 1) D16 K19 S20 T55 H83
Enzyme Commision number 3.6.5.n1: elongation factor 4.
Gene Ontology
Molecular Function
GO:0003746 translation elongation factor activity
GO:0003924 GTPase activity
GO:0005525 GTP binding
GO:0016787 hydrolase activity
GO:0043022 ribosome binding
Biological Process
GO:0006412 translation
GO:0006414 translational elongation
GO:0045727 positive regulation of translation
Cellular Component
GO:0005886 plasma membrane

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Cellular Component
External links
PDB RCSB:5imq, PDBe:5imq, PDBj:5imq
PDBsum5imq
PubMed27137929
UniProtQ5SKA7|LEPA_THET8 Elongation factor 4 (Gene Name=lepA)

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