Structure of PDB 5ien Chain B Binding Site BS01
Receptor Information
>5ien Chain B (length=124) Species:
32630
(synthetic construct) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
SAKEAIEAALADFVKAYNSKDAAGVASKYMDDAAIFPLDMARVDGRQNIQ
KLWQGLMDMGVSEPKLTTLDVQESGDFAFESGSISLKGPGKDSKLVDIAG
KYVEVWRKGDGGWKLYRTIANLDP
Ligand information
Ligand ID
VDY
InChI
InChI=1S/C27H44O2/c1-19-10-13-23(28)18-22(19)12-11-21-9-7-17-27(5)24(14-15-25(21)27)20(2)8-6-16-26(3,4)29/h11-12,20,23-25,28-29H,1,6-10,13-18H2,2-5H3/b21-11+,22-12-/t20-,23+,24-,25+,27-/m1/s1
InChIKey
JWUBBDSIWDLEOM-DTOXIADCSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
C[C@H](CCCC(C)(C)O)[C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C3C[C@H](CCC3=C)O)C
CACTVS 3.341
C[CH](CCCC(C)(C)O)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)CCC3=C
CACTVS 3.341
C[C@H](CCCC(C)(C)O)[C@H]1CC[C@H]2C(/CCC[C@]12C)=C/C=C3/C[C@@H](O)CCC3=C
ACDLabs 10.04
OC3CC(=C/C=C1\CCCC2(C)C(C(C)CCCC(O)(C)C)CCC12)/C(=C)CC3
OpenEye OEToolkits 1.5.0
CC(CCCC(C)(C)O)C1CCC2C1(CCCC2=CC=C3CC(CCC3=C)O)C
Formula
C27 H44 O2
Name
3-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANOL;
25-HYDROXYVITAMIN D3
ChEMBL
CHEMBL1040
DrugBank
DB00146
ZINC
ZINC000004474414
PDB chain
5ien Chain B Residue 201 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
5ien
Unintended specificity of an engineered ligand-binding protein facilitated by unpredicted plasticity of the protein fold.
Resolution
2.089 Å
Binding residue
(original residue number in PDB)
F15 L58 M61 Y104 E106 L125
Binding residue
(residue number reindexed from 1)
F13 L56 M59 Y102 E104 L122
Annotation score
4
External links
PDB
RCSB:5ien
,
PDBe:5ien
,
PDBj:5ien
PDBsum
5ien
PubMed
30566669
[
Back to BioLiP
]