Structure of PDB 5hab Chain B Binding Site BS01

Receptor Information

>5hab Chain B (length=463) Species: 1094980 (Methanolobus psychrophilus R15)

HHHSSGLVPRGSHMASTEIGIIAVGGYNEMGRNMTAIRVNEDIIIIDMGI
RLDRVQIHEDVDTDRMHSLELIEMGAIPDDTIMNEVNGNVRAIVCTHGAL
DHIGAIPKLAHRYAAPIIATPYTTALIKHQIDSERKFGVKNNIVALKAGE
TLEITKDITIEFINTQHSIIDTVFVAIHTPSGAVVYACDFKFDRTPTLGE
VPDFDRLKELGKEGVIALITESTNAGRNGKTPSELIAHMMLKDVLLGTEE
SAVGMIVTTFASHIARVNSIVQFAQEMGRIPVLLGRSMERYVGTAYQLGY
IDLPENVEIYGSRRDIDNALKKIMEAGKDKYLPVMTGHQGEPGAVLGRIA
NGETPFKVETGDRIIFSANVIPNPMTQANRYALETKLKMKGARIYDNVHV
SGHAYREDHWELLRMLKPEHVIPAHGTIQMHSEYIQMAEDAGYSLGDTLH
LLRNGEELYIEED

Ligand information

>5hab Chain D (length=5)

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Receptor-Ligand Complex Structure

Structure summary

• PDB: 5hab Molecular insights into catalysis and processive exonucleolytic mechanisms of prokaryotic RNase J revealing striking parallels with that of eukaryotic Xrn1
• Resolution: 2.3 Å
• Binding residue (original residue number in PDB): L37 L85 D86 F245 S247 R271 S272 T321 E326 A329 N354 I356 T361 H384 S386 G387 H388
• Binding residue (residue number reindexed from 1): L52 L100 D101 F260 S262 R286 S287 T336 E341 A344 N369 I371 T376 H399 S401 G402 H403

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Thu Feb 20 04:02:55 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5hab', asym_id = 'B', bs = 'BS01', title = 'Molecular insights into catalysis and processive... striking parallels with that of eukaryotic Xrn1 '

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5hab', asym_id='B', bs='BS01', title='Molecular insights into catalysis and processive... striking parallels with that of eukaryotic Xrn1 ')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003723,0004534,0046872', uniprot = '', pdbid = '5hab', asym_id = 'B'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0004534,0046872', uniprot='', pdbid='5hab', asym_id='B')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>