Structure of PDB 5gvw Chain B Binding Site BS01

Receptor Information
>5gvw Chain B (length=389) Species: 1313 (Streptococcus pneumoniae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KRAVVFAGDYAYIRQIETAMKSLCRHNSHLKIYLLNQDIPQEWFSQIRIY
LQEMGGDLIDCKLIGSQFMTFARYFIPDFVTEDKVLYLDSDLIVTGDLTD
LFELDLGENYLAAARSCFGAGVGFNAGVLLINNKKWGSETIRQKLIDLTE
KEHENVEEGDQSILNMLFKDQYSSLEDQYNFQIGYDYGAATFKHQFIFDI
PLEPLPLILHYISQDKPWNQFSVGRLREVWWEYSLMDWSVILNEWFSKSV
KYPSKSQIFKLQCVNLTNSWCVEKIDYLAEQLPEVHFHIVAYTNMANELL
ALTRFPNVTVYPNSLPMLLEQIVIASDLYLDLNHDRKLEDAYEFVLKYKK
PMIAFDNTCSENLSEISYEGIYPSSIPKKMVAAIRSYMR
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain5gvw Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5gvw Defining the enzymatic pathway for polymorphic O-glycosylation of the pneumococcal serine-rich repeat protein PsrP.
Resolution2.4 Å
Binding residue
(original residue number in PDB)		D106 D108 H227
Binding residue
(residue number reindexed from 1)		D89 D91 H210
Annotation score4
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 11:44:25 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5gvw', asym_id = 'B', bs = 'BS01', title = 'Defining the enzymatic pathway for polymorphic O...the pneumococcal serine-rich repeat protein PsrP.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5gvw', asym_id='B', bs='BS01', title='Defining the enzymatic pathway for polymorphic O...the pneumococcal serine-rich repeat protein PsrP.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0016757', uniprot = '', pdbid = '5gvw', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016757', uniprot='', pdbid='5gvw', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>