Structure of PDB 5fnn Chain B Binding Site BS01

Receptor Information

>5fnn Chain B (length=208) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

YRDQPLGELALSIPRASALFRKYDMDYAAGGKQTLARAAARKELDVEVIE
AEKDWRSAPLAEIIDHIIVRYHDRHREQLPELILQATKVERVHADKPSVP
KGLTKYLTMLHEELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEHDE
AGELLEVIKHTTNNVTPPPEACTTWKAMYNGINELIDDLMDHISLENNVL
FPRALAGE

Ligand information

InChI=1S/Fe/q+2

CWYNVVGOOAEACU-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Fe+2]
CACTVS 3.341	[Fe++]

Formula

Name

FE (II) ION

PDB chain

5fnn Chain B Residue 1221 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	5fnn Crystal Structure of the Repair of Iron Centers Protein Ytfe and its Interaction with No
Resolution	2.09 Å
Binding residue (original residue number in PDB)	H84 E133 H204 E208
Binding residue (residue number reindexed from 1)	H72 E121 H192 E196
Annotation score	5

Enzymatic activity

Enzyme Commision number

1.7.2.5: nitric-oxide reductase (cytochrome c).

Gene Ontology

	Molecular Function
GO:0005506	iron ion binding
GO:0005515	protein binding
GO:0046872	metal ion binding
GO:0098809	nitrite reductase activity

	Biological Process
GO:0006979	response to oxidative stress
GO:0030091	protein repair
GO:0051409	response to nitrosative stress

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:5fnn, PDBe:5fnn, PDBj:5fnn
PDBsum	5fnn
PubMed	27246459
UniProt	P69506\|YTFE_ECOLI Iron-sulfur cluster repair protein YtfE (Gene Name=ytfE)

[Back to BioLiP]