Structure of PDB 5fhd Chain B Binding Site BS01

Receptor Information

>5fhd Chain B (length=400)

MEDMILTEEMQKIMNLIQDDENNVFVTGKAGSGKTTFLKYLIEKSGKNCI
VAAPTGIAAINAGGVTLHSLFGIPFGPITPYDRLENKFSEYKVELLLKME
LLIIDEISMVRPDILDTIDRKLRWVYESDEPFGGVQVVMFGDLFQLPPVT
KKQEREILSDFYDGFFFFNALVFKRTGFHIVELTKIFRQTEPEFINVLNN
IRNYQVTSDELDLLSELKDRKISSSYDNEYIHICTHKADVEKINADKLGQ
EIRNYDIVSIPCDLHLKLRARVMSLVNDSLYYNGMLGIVTALEDNTVRMD
NGRTIKFERYTWSSCTQFPLTLAWAITIHKSQGLTFDKIIIHVSHTFCPG
QLYVALSRCRTLEGIVSDAFITKQMIIPEYALIDFERAYKSEGNYYGKRL

Ligand information

>5fhd Chain E (length=7)

ttttttc

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5fhd Structural and Functional Insights into the Unwinding Mechanism of Bacteroides sp Pif1
• Resolution: 2.0 Å
• Binding residue (original residue number in PDB): P54 T55 T66 H68 S69 G72 I73 F75 S89 Y91 K92 V149 K151 H236 T359 H361 K362 F379
• Binding residue (residue number reindexed from 1): P54 T55 T66 H68 S69 G72 I73 F75 S89 Y91 K92 V149 K151 H236 T327 H329 K330 F347

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Tue Nov 26 05:13:04 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5fhd', asym_id = 'B', bs = 'BS01', title = 'Structural and Functional Insights into the Unwinding Mechanism of Bacteroides sp Pif1'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5fhd', asym_id='B', bs='BS01', title='Structural and Functional Insights into the Unwinding Mechanism of Bacteroides sp Pif1')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0000723,0003678,0006281', uniprot = '', pdbid = '5fhd', asym_id = 'B'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000723,0003678,0006281', uniprot='', pdbid='5fhd', asym_id='B')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>