Structure of PDB 5f13 Chain B Binding Site BS01

Receptor Information

>5f13 Chain B (length=449) Species: 559292 (Saccharomyces cerevisiae S288C)

IPGRFMTIDKGTFGEYTASTRWPIIIQNAIDDLSKHQETEKSNGTKFEQG
EVIKKELKEFRQEIIDRVPLRPFTEEEIKIANVPLSFNEYLKKHPEVNWG
AVEWLFSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVVELA
LRYENLLPQLREMKQNPGNEIDDILKVLFKEFIEISLWGNDIKSIQGAKA
RAASESKIVVNDTEKAWEVLTKARADEIRVDFVLDNSGFELYADLMLAAF
LLQSGLATKCIFHAKDIPYMVSDVMLKDFDILVHDLRDREFFPSGEPSTK
ESRALDLFAGEMEKFVSSGKIEFREDSFWTTELDYWNLDANETKYHGSIL
HKDLQKSNLVIFKGDLNYRKLTGDRKWPRTTKWETAIGPLATNGITSLSL
RTCKADVQVALPEGLDAKLSQEWEKENPGRGSWWCCSGKWAVICFCSGI

Ligand information

• Ligand ID: MN
• InChI: InChI=1S/Mn/q+2
• InChIKey: WAEMQWOKJMHJLA-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mn+2]
  CACTVS 3.341: [Mn++]
• Formula: Mn
• Name: MANGANESE (II) ION
• DrugBank: DB06757
• PDB chain: 5f13 Chain B Residue 501

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5f13 A family of metal-dependent phosphatases implicated in metabolite damage-control.
• Resolution: 2.393 Å
• Binding residue (original residue number in PDB): D254 N255 D292
• Binding residue (residue number reindexed from 1): D235 N236 D273
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 3.1.3.-

Gene Ontology

Molecular Function

• GO:0016787 hydrolase activity
• GO:0016791 phosphatase activity
• GO:0046872 metal ion binding
• GO:0097023 fructose 6-phosphate aldolase activity
• GO:0103026 fructose-1-phosphatase activity

Biological Process

• GO:0006974 DNA damage response
• GO:0008150 biological_process

Cellular Component

• GO:0005634 nucleus
• GO:0005737 cytoplasm

External links

• PDB: RCSB:5f13, PDBe:5f13, PDBj:5f13
• PDBsum: 5f13
• PubMed: 27322068
• UniProt: Q04371|ARMT1_YEAST Damage-control phosphatase YMR027W (Gene Name=YMR027W)