Structure of PDB 5doc Chain B Binding Site BS01

Receptor Information
>5doc Chain B (length=202) Species: 10360 (Human herpesvirus 5 strain AD169) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KESICLPFNFHSHRQHTCLDISPYGNEQVSRIACTSCEDNRILPTASDAM
VAFINQTSNIMKNRNFYYGFCKSSELLKLSTNQPPIFQIYYLLHAANHDI
VPFMHAEDGRLHMHVIFENPDVHIPCDCITQMLTAAREDYSVTLNIVRDH
VVISVLCHAVSASSVKIDVTILQRKIDEMDIPNDVSESFERYKELIQELC
QS
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain5doc Chain B Residue 300 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5doc Unexpected features and mechanism of heterodimer formation of a herpesvirus nuclear egress complex.
Resolution1.94 Å
Binding residue
(original residue number in PDB)		C34 C50 C53 H139
Binding residue
(residue number reindexed from 1)		C18 C34 C37 H123
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0046765 viral budding from nuclear membrane
GO:0046802 exit of virus from host cell nucleus by nuclear egress

View graph for
Biological Process
External links
PDB RCSB:5doc, PDBe:5doc, PDBj:5doc
PDBsum5doc
PubMed26511021
UniProtP16794|NEC1_HCMVA Nuclear egress protein 1 (Gene Name=NEC1)

[Back to BioLiP]