Structure of PDB 5dny Chain B Binding Site BS01

Receptor Information

>5dny Chain B (length=359) Species: 243232 (Methanocaldococcus jannaschii DSM 2661) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MSMILKEIRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALF
GAGSNFNYDTIITKGKKSVYVELDFEVNGNNYKIIREYDSGRGGAKLYKN
GKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLKPSEKLE
TVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGEKEMSNLEKEKEKLTK
FVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELT
KDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILD
EPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVKKDG
NVSKVKING

Ligand information

>5dny Chain F (length=23) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

cgaatgtgtgtctcaatcccaac

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5dny ATP-dependent DNA binding, unwinding, and resection by the Mre11/Rad50 complex.
Resolution	3.11 Å
Binding residue (original residue number in PDB)	A52 S54 N57 Y58 R92 I108 S109 K144
Binding residue (residue number reindexed from 1)	A52 S54 N57 Y58 R92 I108 S109 K144

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0016887	ATP hydrolysis activity

	Biological Process
GO:0006302	double-strand break repair

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Molecular Function

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Biological Process

External links

PDB	RCSB:5dny, PDBe:5dny, PDBj:5dny
PDBsum	5dny
PubMed	26717941
UniProt	Q58718\|RAD50_METJA DNA double-strand break repair Rad50 ATPase (Gene Name=rad50)

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