Structure of PDB 5diz Chain B Binding Site BS01

Receptor Information
>5diz Chain B (length=472) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RNPETNLLFNLNSCSKSKDLSAALALYDAAITSSEVRLSQQHFQTLLYLC
SASITDISLQYLAIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGD
YAFKVVKEFVSVGGVSIPRLRTYAPALLCFCEKLEAEKGYEVEEHMEAAG
IALEEAEISALLKVSAATGRENKVYRYLHKLREYVGCVSEETLKIIEEWF
CGEKAGEVGDDVGMLREAVLNNGGGWHGHGWVGEGKWTVKKGNVSSTGRC
LSCSEQLACVDTNEVETQKFVDSLVALAMDVFSEFQDWLEKHGDYEAIVD
GANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKRRVKTL
LENPTHRNLVEEWISNGVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMR
DHIFELLGSTFFQKWKERHQVRYTFVKGNLKLEMPSPFSVVIQESEKGSW
HFPVSCENNEESSRTWMCISRQ
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain5diz Chain B Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5diz Nuclear Protein-Only Ribonuclease P2 Structure and Biochemical Characterization Provide Insight into the Conserved Properties of tRNA 5' End Processing Enzymes.
Resolution3.2 Å
Binding residue
(original residue number in PDB)		C281 C284 H494 C511
Binding residue
(residue number reindexed from 1)		C250 C253 H451 C468
Annotation score4
Enzymatic activity
Enzyme Commision number 3.1.26.5: ribonuclease P.
Gene Ontology
Molecular Function
GO:0004518 nuclease activity
GO:0004526 ribonuclease P activity
GO:0046872 metal ion binding
Biological Process
GO:0001682 tRNA 5'-leader removal
GO:0006397 mRNA processing
GO:0008033 tRNA processing
GO:0043144 sno(s)RNA processing
Cellular Component
GO:0005634 nucleus
GO:0043231 intracellular membrane-bounded organelle

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5diz, PDBe:5diz, PDBj:5diz
PDBsum5diz
PubMed26655022
UniProtQ680B9|PRRP2_ARATH Proteinaceous RNase P 2 (Gene Name=PRORP2)

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