Structure of PDB 5d8z Chain B Binding Site BS01

Receptor Information
>5d8z Chain B (length=324) Species: 5315 (Ganoderma lucidum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LQFAGVNIAGFDFGCGSDGTCNASGAWPPLTQYYGADGAGQMKHFVDDDG
FNVFRLPVGWQFITDGVAGGDIDEDNWAEYDALVQACLDAGASCIVDVHN
YARFNGEIIGQGGPTNQDFAALWSSIAAKYADNDKIIFGVMNEPHDVPDI
NLWADSVQAAVTAIRQAGATSQIILLPGNNWTSAETFVSNGSADALKKVT
NPDGSVTNLIFDVHKYLDSDNSGTHEECTTNNIDNAWAPLAEWLRCNGRQ
AFNTETGGGNVASCETFMCQQVAYQNANSDVFLGYVGWAAGNFYQGYVLG
EVPTDTNGVWTDTALVSACLAPNA
Ligand information
Ligand IDBGC
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-VFUOTHLCSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.370OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O
CACTVS 3.370OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.6C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
ACDLabs 12.01OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namebeta-D-glucopyranose;
beta-D-glucose;
D-glucose;
glucose
ChEMBLCHEMBL1614854
DrugBankDB02379
ZINCZINC000003833800
PDB chain5d8z Chain D Residue 2 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5d8z Functional and structural analyses of a 1,4-beta-endoglucanase from Ganoderma lucidum.
Resolution2.7 Å
Binding residue
(original residue number in PDB)		E164 Y237 N242
Binding residue
(residue number reindexed from 1)		E143 Y216 N221
Annotation score4
Enzymatic activity
Enzyme Commision number 3.2.1.4: cellulase.
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016798 hydrolase activity, acting on glycosyl bonds
Biological Process
GO:0000272 polysaccharide catabolic process
GO:0005975 carbohydrate metabolic process
GO:0009251 glucan catabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5d8z, PDBe:5d8z, PDBj:5d8z
PDBsum5d8z
PubMed26992795
UniProtA0A1A9TAJ1

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